Information for motif4


Reverse Opposite:

p-value:1e-117
log p-value:-2.705e+02
Information Content per bp:1.667
Number of Target Sequences with motif1821.0
Percentage of Target Sequences with motif13.12%
Number of Background Sequences with motif2674.2
Percentage of Background Sequences with motif7.46%
Average Position of motif in Targets97.0 +/- 53.8bp
Average Position of motif in Background99.8 +/- 58.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0515.1_Sox6/Jaspar

Match Rank:1
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:RRRACAAWGGMH
AAAACAATGG--

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.94
Offset:2
Orientation:reverse strand
Alignment:RRRACAAWGGMH
--RACAAWGG--

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.93
Offset:3
Orientation:reverse strand
Alignment:RRRACAAWGGMH
---ACAAAG---

MA0143.3_Sox2/Jaspar

Match Rank:4
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:RRRACAAWGGMH
--AACAAAGG--

MA0514.1_Sox3/Jaspar

Match Rank:5
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:RRRACAAWGGMH
AAAACAAAGG--

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---RRRACAAWGGMH--
ATAAGAACAAAGGACTA

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:RRRACAAWGGMH
RNAACAATGG--

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---RRRACAAWGGMH--
AGAAGAACAAAGGACTA

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:RRRACAAWGGMH
-GAACAATGGN-

MA0078.1_Sox17/Jaspar

Match Rank:10
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:RRRACAAWGGMH
--GACAATGNN-