Information for motif7


Reverse Opposite:

p-value:1e-57
log p-value:-1.333e+02
Information Content per bp:1.445
Number of Target Sequences with motif503.0
Percentage of Target Sequences with motif3.62%
Number of Background Sequences with motif581.0
Percentage of Background Sequences with motif1.62%
Average Position of motif in Targets99.8 +/- 53.5bp
Average Position of motif in Background103.3 +/- 61.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0046.1_HNF1A/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GTTAATSANT---
GGTTAATAATTAAC

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GTTAATSANT
GKTAATGR--

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GTTAATSANT
---AATTATT

PH0019.1_Dbx2/Jaspar

Match Rank:4
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GTTAATSANT--
TTTAATTAATTAATTC

PH0175.1_Vax2/Jaspar

Match Rank:5
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GTTAATSANT----
GNCTTAATTAGTGNNN

PH0096.1_Lhx6_1/Jaspar

Match Rank:6
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GTTAATSANT---
GAGCGTTAATTAATGTA

PH0030.1_Esx1/Jaspar

Match Rank:7
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GTTAATSANT---
ATCCATTAATTAATTGA

PH0051.1_Hoxa4/Jaspar

Match Rank:8
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---GTTAATSANT----
CNAGTTAATTAATAANN

PH0050.1_Hoxa3/Jaspar

Match Rank:9
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GTTAATSANT
TTGAGGTAATTAGT

PH0059.1_Hoxb4/Jaspar

Match Rank:10
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GTTAATSANT----
CGCGTTAATTAATTACC