Information for motif9


Reverse Opposite:

p-value:1e-28
log p-value:-6.568e+01
Information Content per bp:1.570
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets116.7 +/- 61.1bp
Average Position of motif in Background141.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGGCTCTTATAC
AASCACTCAA--

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGGCTCTTATAC
-NGCTN------

PB0203.1_Zfp691_2/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AGGCTCTTATAC-
TACGAGACTCCTCTAAC

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGGCTCTTATAC
-RSCACTYRAG-

PH0068.1_Hoxc13/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGGCTCTTATAC---
AAAGCTCGTAAAATTT

PH0048.1_Hoxa13/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGGCTCTTATAC---
AAACCTCGTAAAATTT

MA0108.2_TBP/Jaspar

Match Rank:7
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---AGGCTCTTATAC
NNNNNNCTTTTATAN

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.50
Offset:2
Orientation:forward strand
Alignment:AGGCTCTTATAC
--GCTCCG----

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:AGGCTCTTATAC
AAGCACTTAA--

POL012.1_TATA-Box/Jaspar

Match Rank:10
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---AGGCTCTTATAC
NNNNNNCTTTTATAN