Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 13879)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 35821)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-798	-1.839e+03	0.0000	1399.0	10.08%	419.1	1.17%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-610	-1.406e+03	0.0000	1506.0	10.85%	702.3	1.96%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-383	-8.827e+02	0.0000	2653.0	19.11%	2844.1	7.94%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-371	-8.565e+02	0.0000	2232.0	16.08%	2189.9	6.11%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-288	-6.652e+02	0.0000	1988.0	14.32%	2092.8	5.84%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-240	-5.536e+02	0.0000	2390.0	17.22%	3016.6	8.42%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-145	-3.359e+02	0.0000	970.0	6.99%	981.5	2.74%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-121	-2.806e+02	0.0000	3142.0	22.63%	5398.0	15.06%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-113	-2.624e+02	0.0000	1680.0	12.10%	2422.2	6.76%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-113	-2.603e+02	0.0000	3439.0	24.77%	6147.7	17.16%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-108	-2.496e+02	0.0000	2697.0	19.43%	4567.2	12.75%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-97	-2.248e+02	0.0000	1271.0	9.16%	1745.2	4.87%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-97	-2.239e+02	0.0000	1722.0	12.40%	2630.4	7.34%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-91	-2.113e+02	0.0000	1206.0	8.69%	1660.8	4.63%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-87	-2.025e+02	0.0000	1099.0	7.92%	1483.1	4.14%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-80	-1.849e+02	0.0000	2220.0	15.99%	3827.3	10.68%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-79	-1.841e+02	0.0000	1620.0	11.67%	2567.9	7.17%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-51	-1.180e+02	0.0000	1420.0	10.23%	2428.4	6.78%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-47	-1.096e+02	0.0000	85.0	0.61%	26.5	0.07%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-46	-1.082e+02	0.0000	2076.0	14.95%	3918.3	10.93%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-45	-1.042e+02	0.0000	3075.0	22.15%	6246.6	17.43%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-39	-9.175e+01	0.0000	1354.0	9.75%	2418.8	6.75%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-34	-7.934e+01	0.0000	288.0	2.07%	327.8	0.91%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-33	-7.686e+01	0.0000	759.0	5.47%	1231.5	3.44%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-32	-7.377e+01	0.0000	270.0	1.94%	308.8	0.86%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-31	-7.359e+01	0.0000	447.0	3.22%	626.4	1.75%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-29	-6.785e+01	0.0000	290.0	2.09%	355.6	0.99%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-25	-5.976e+01	0.0000	439.0	3.16%	655.7	1.83%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-25	-5.847e+01	0.0000	72.0	0.52%	39.0	0.11%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-25	-5.768e+01	0.0000	2784.0	20.05%	5973.3	16.67%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-23	-5.439e+01	0.0000	5516.0	39.73%	12753.3	35.59%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-23	-5.375e+01	0.0000	182.0	1.31%	201.4	0.56%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-22	-5.218e+01	0.0000	7410.0	53.38%	17622.2	49.18%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-22	-5.119e+01	0.0000	599.0	4.31%	1014.2	2.83%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-21	-5.042e+01	0.0000	2596.0	18.70%	5600.8	15.63%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-20	-4.825e+01	0.0000	1458.0	10.50%	2939.6	8.20%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-20	-4.676e+01	0.0000	1530.0	11.02%	3119.0	8.70%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-19	-4.565e+01	0.0000	2493.0	17.96%	5406.7	15.09%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-18	-4.164e+01	0.0000	169.0	1.22%	204.2	0.57%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-18	-4.153e+01	0.0000	5018.0	36.15%	11691.6	32.63%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-16	-3.854e+01	0.0000	4447.0	32.03%	10306.2	28.76%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-16	-3.841e+01	0.0000	485.0	3.49%	837.9	2.34%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-16	-3.727e+01	0.0000	2938.0	21.16%	6590.2	18.39%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-14	-3.395e+01	0.0000	1902.0	13.70%	4125.8	11.51%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-14	-3.291e+01	0.0000	5343.0	38.49%	12660.0	35.33%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-14	-3.278e+01	0.0000	792.0	5.71%	1545.0	4.31%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-14	-3.263e+01	0.0000	2926.0	21.08%	6627.1	18.49%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-13	-3.156e+01	0.0000	415.0	2.99%	724.8	2.02%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-13	-3.121e+01	0.0000	359.0	2.59%	608.3	1.70%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-13	-3.010e+01	0.0000	189.0	1.36%	271.9	0.76%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-12	-2.991e+01	0.0000	2975.0	21.43%	6789.1	18.95%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-12	-2.861e+01	0.0000	786.0	5.66%	1563.1	4.36%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-12	-2.840e+01	0.0000	288.0	2.07%	474.6	1.32%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-12	-2.780e+01	0.0000	308.0	2.22%	518.1	1.45%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-11	-2.550e+01	0.0000	416.0	3.00%	760.4	2.12%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-10	-2.490e+01	0.0000	2647.0	19.07%	6062.1	16.92%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-10	-2.437e+01	0.0000	291.0	2.10%	499.4	1.39%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-10	-2.420e+01	0.0000	729.0	5.25%	1470.2	4.10%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-9	-2.208e+01	0.0000	141.0	1.02%	205.6	0.57%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-9	-2.137e+01	0.0000	882.0	6.35%	1851.1	5.17%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-8	-2.061e+01	0.0000	1310.0	9.44%	2874.2	8.02%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-8	-2.060e+01	0.0000	792.0	5.71%	1649.4	4.60%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-8	-1.964e+01	0.0000	501.0	3.61%	989.1	2.76%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-8	-1.934e+01	0.0000	94.0	0.68%	125.6	0.35%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-8	-1.933e+01	0.0000	2079.0	14.98%	4760.7	13.29%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-7	-1.811e+01	0.0000	697.0	5.02%	1453.2	4.06%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-7	-1.781e+01	0.0000	2134.0	15.37%	4922.8	13.74%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-7	-1.711e+01	0.0000	1806.0	13.01%	4129.2	11.52%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-6	-1.512e+01	0.0000	2523.0	18.17%	5938.3	16.57%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-6	-1.443e+01	0.0000	394.0	2.84%	789.7	2.20%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-6	-1.439e+01	0.0000	3163.0	22.78%	7554.8	21.08%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-6	-1.418e+01	0.0000	153.0	1.10%	260.4	0.73%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-6	-1.403e+01	0.0000	518.0	3.73%	1078.7	3.01%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-5	-1.367e+01	0.0000	1240.0	8.93%	2806.8	7.83%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-5	-1.359e+01	0.0000	1438.0	10.36%	3290.8	9.18%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-5	-1.283e+01	0.0000	1084.0	7.81%	2441.0	6.81%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-5	-1.225e+01	0.0000	1015.0	7.31%	2283.5	6.37%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-5	-1.173e+01	0.0000	203.0	1.46%	381.6	1.06%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-5	-1.173e+01	0.0000	187.0	1.35%	346.3	0.97%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-5	-1.166e+01	0.0000	3301.0	23.78%	7972.5	22.25%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-4	-1.118e+01	0.0000	479.0	3.45%	1017.2	2.84%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-4	-1.111e+01	0.0000	1718.0	12.38%	4028.0	11.24%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-4	-1.083e+01	0.0001	339.0	2.44%	695.1	1.94%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-4	-1.078e+01	0.0001	1001.0	7.21%	2273.8	6.35%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-4	-1.061e+01	0.0001	2042.0	14.71%	4843.5	13.52%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-4	-1.050e+01	0.0001	251.0	1.81%	497.8	1.39%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-4	-1.040e+01	0.0001	1567.0	11.29%	3669.9	10.24%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-4	-1.035e+01	0.0001	1582.0	11.40%	3707.5	10.35%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-4	-1.031e+01	0.0001	2153.0	15.51%	5127.4	14.31%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-4	-1.029e+01	0.0001	2358.0	16.99%	5640.3	15.74%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-4	-1.005e+01	0.0001	4029.0	29.02%	9863.8	27.53%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-4	-9.811e+00	0.0001	912.0	6.57%	2073.3	5.79%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-4	-9.298e+00	0.0002	375.0	2.70%	794.1	2.22%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-4	-9.245e+00	0.0003	1799.0	12.96%	4272.0	11.92%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-3	-9.048e+00	0.0003	1844.0	13.28%	4388.3	12.25%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-3	-9.023e+00	0.0003	1861.0	13.41%	4431.7	12.37%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-3	-8.944e+00	0.0003	84.0	0.61%	141.8	0.40%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-3	-8.695e+00	0.0004	1767.0	12.73%	4205.7	11.74%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-3	-8.554e+00	0.0005	134.0	0.97%	250.1	0.70%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-3	-8.482e+00	0.0005	684.0	4.93%	1542.3	4.30%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-3	-8.465e+00	0.0005	1426.0	10.27%	3363.8	9.39%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-3	-8.427e+00	0.0005	517.0	3.72%	1141.7	3.19%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-8.347e+00	0.0006	373.0	2.69%	800.3	2.23%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-3	-8.347e+00	0.0006	1858.0	13.38%	4441.1	12.39%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-8.161e+00	0.0007	953.0	6.87%	2203.3	6.15%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-3	-7.427e+00	0.0014	572.0	4.12%	1288.3	3.60%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-3	-7.399e+00	0.0014	2118.0	15.26%	5119.2	14.29%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-6.797e+00	0.0025	555.0	4.00%	1257.2	3.51%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-6.789e+00	0.0025	4410.0	31.77%	10953.5	30.57%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-6.720e+00	0.0027	89.0	0.64%	163.5	0.46%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-2	-6.621e+00	0.0030	702.0	5.06%	1618.7	4.52%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-2	-6.416e+00	0.0036	268.0	1.93%	575.6	1.61%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-2	-6.276e+00	0.0041	449.0	3.23%	1009.3	2.82%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-6.169e+00	0.0045	572.0	4.12%	1309.0	3.65%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-6.006e+00	0.0053	856.0	6.17%	2010.0	5.61%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-5.931e+00	0.0056	1418.0	10.21%	3408.1	9.51%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-5.889e+00	0.0058	1025.0	7.38%	2430.7	6.78%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-2	-5.791e+00	0.0064	1020.0	7.35%	2420.1	6.75%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-2	-5.790e+00	0.0064	69.0	0.50%	125.8	0.35%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-2	-5.757e+00	0.0065	960.0	6.92%	2272.9	6.34%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-2	-5.735e+00	0.0066	24.0	0.17%	33.3	0.09%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-5.716e+00	0.0066	259.0	1.87%	562.9	1.57%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-5.677e+00	0.0068	65.0	0.47%	117.3	0.33%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-2	-5.485e+00	0.0082	780.0	5.62%	1833.7	5.12%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-5.471e+00	0.0083	689.0	4.96%	1609.9	4.49%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-5.322e+00	0.0095	680.0	4.90%	1590.8	4.44%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-2	-5.199e+00	0.0107	77.0	0.55%	146.8	0.41%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-2	-5.130e+00	0.0114	1077.0	7.76%	2579.3	7.20%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-2	-5.032e+00	0.0124	239.0	1.72%	523.3	1.46%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-4.747e+00	0.0164	68.0	0.49%	129.7	0.36%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-4.579e+00	0.0193	485.0	3.49%	1126.9	3.14%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-4.509e+00	0.0205	70.0	0.50%	135.2	0.38%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-4.497e+00	0.0206	378.0	2.72%	866.8	2.42%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-4.448e+00	0.0215	3048.0	21.96%	7584.4	21.17%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-4.380e+00	0.0228	3075.0	22.15%	7656.9	21.37%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-4.337e+00	0.0236	785.0	5.65%	1873.1	5.23%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-1	-4.318e+00	0.0239	88.0	0.63%	177.4	0.50%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-4.201e+00	0.0267	1434.0	10.33%	3503.6	9.78%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-4.195e+00	0.0267	808.0	5.82%	1934.8	5.40%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-4.093e+00	0.0293	264.0	1.90%	596.7	1.67%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-4.087e+00	0.0293	1349.0	9.72%	3293.5	9.19%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-3.988e+00	0.0321	102.0	0.73%	212.2	0.59%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-3.945e+00	0.0333	725.0	5.22%	1734.3	4.84%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.944e+00	0.0333	422.0	3.04%	984.0	2.75%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-3.853e+00	0.0360	487.0	3.51%	1146.5	3.20%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-3.573e+00	0.0473	192.0	1.38%	430.8	1.20%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-3.453e+00	0.0530	582.0	4.19%	1391.7	3.88%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-3.389e+00	0.0561	2404.0	17.32%	5996.3	16.73%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.385e+00	0.0561	2334.0	16.81%	5818.4	16.24%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.296e+00	0.0607	433.0	3.12%	1025.2	2.86%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-3.149e+00	0.0699	2920.0	21.03%	7325.6	20.44%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-3.076e+00	0.0747	138.0	0.99%	307.2	0.86%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-3.002e+00	0.0799	172.0	1.24%	390.5	1.09%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.797e+00	0.0974	141.0	1.02%	318.1	0.89%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-2.679e+00	0.1089	256.0	1.84%	601.1	1.68%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-2.668e+00	0.1094	1178.0	8.49%	2916.6	8.14%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-2.575e+00	0.1193	230.0	1.66%	539.3	1.50%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.550e+00	0.1216	569.0	4.10%	1384.2	3.86%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-2.515e+00	0.1251	488.0	3.52%	1182.3	3.30%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-2.475e+00	0.1294	245.0	1.76%	578.8	1.62%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-2.429e+00	0.1346	243.0	1.75%	574.7	1.60%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.421e+00	0.1349	270.0	1.94%	641.3	1.79%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-2.358e+00	0.1428	2459.0	17.71%	6195.9	17.29%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-2.343e+00	0.1441	472.0	3.40%	1147.9	3.20%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-2.319e+00	0.1466	335.0	2.41%	806.0	2.25%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.308e+00	0.1473	554.0	3.99%	1354.7	3.78%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.303e+00	0.1473	324.0	2.33%	778.4	2.17%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-2.244e+00	0.1553	513.0	3.70%	1253.1	3.50%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.210e+00	0.1597	55.0	0.40%	120.0	0.33%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-2.173e+00	0.1647	553.0	3.98%	1356.9	3.79%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.117e+00	0.1731	858.0	6.18%	2129.7	5.94%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.063e+00	0.1818	153.0	1.10%	359.1	1.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.003e+00	0.1918	23.0	0.17%	46.9	0.13%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.975e+00	0.1962	177.0	1.28%	421.0	1.17%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.904e+00	0.2093	315.0	2.27%	766.1	2.14%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.887e+00	0.2117	129.0	0.93%	303.8	0.85%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.794e+00	0.2311	593.0	4.27%	1471.3	4.11%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.741e+00	0.2424	404.0	2.91%	995.2	2.78%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.734e+00	0.2427	609.0	4.39%	1514.5	4.23%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.721e+00	0.2446	773.0	5.57%	1931.1	5.39%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.703e+00	0.2476	601.0	4.33%	1495.2	4.17%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.659e+00	0.2572	276.0	1.99%	675.3	1.88%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.538e+00	0.2872	101.0	0.73%	240.1	0.67%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.538e+00	0.2872	101.0	0.73%	240.1	0.67%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.492e+00	0.2992	562.0	4.05%	1405.8	3.92%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.463e+00	0.3063	2036.0	14.67%	5176.1	14.44%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.441e+00	0.3114	726.0	5.23%	1825.7	5.09%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.404e+00	0.3213	648.0	4.67%	1628.4	4.54%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.350e+00	0.3373	333.0	2.40%	829.8	2.32%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.319e+00	0.3462	9.0	0.06%	18.1	0.05%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.281e+00	0.3578	24.0	0.17%	54.1	0.15%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.259e+00	0.3639	183.0	1.32%	452.3	1.26%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.250e+00	0.3652	478.0	3.44%	1202.8	3.36%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.226e+00	0.3722	168.0	1.21%	415.7	1.16%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.219e+00	0.3727	611.0	4.40%	1543.6	4.31%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.188e+00	0.3825	382.0	2.75%	960.0	2.68%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.134e+00	0.4017	62.0	0.45%	150.9	0.42%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-1.103e+00	0.4125	55.0	0.40%	133.7	0.37%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.079e+00	0.4201	542.0	3.90%	1374.8	3.84%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.051e+00	0.4299	717.0	5.16%	1825.0	5.09%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.050e+00	0.4299	1742.0	12.55%	4457.2	12.44%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.032e+00	0.4341	580.0	4.18%	1474.9	4.12%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.026e+00	0.4344	2061.0	14.85%	5280.8	14.74%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.010e+00	0.4392	339.0	2.44%	858.9	2.40%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-9.666e-01	0.4565	246.0	1.77%	622.1	1.74%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-9.369e-01	0.4679	2647.0	19.07%	6799.7	18.98%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-9.263e-01	0.4706	148.0	1.07%	373.3	1.04%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-7.364e-01	0.5663	161.0	1.16%	413.3	1.15%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.358e-01	0.5663	2815.0	20.28%	7259.8	20.26%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-7.269e-01	0.5663	37.0	0.27%	94.9	0.26%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-7.265e-01	0.5663	84.0	0.61%	215.8	0.60%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-6.944e-01	0.5794	430.0	3.10%	1109.5	3.10%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-5.597e-01	0.6599	863.0	6.22%	2240.3	6.25%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-5.551e-01	0.6599	745.0	5.37%	1935.4	5.40%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.551e-01	0.6599	133.0	0.96%	348.1	0.97%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-5.487e-01	0.6599	303.0	2.18%	790.2	2.21%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-4.882e-01	0.6957	1608.0	11.58%	4178.2	11.66%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.328e-01	0.7320	122.0	0.88%	325.4	0.91%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-4.057e-01	0.7487	250.0	1.80%	662.4	1.85%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.944e-01	0.7537	1280.0	9.22%	3343.3	9.33%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.586e-01	0.7777	37.0	0.27%	103.1	0.29%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.510e-01	0.7801	524.0	3.77%	1383.1	3.86%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-3.474e-01	0.7801	1263.0	9.10%	3307.2	9.23%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.277e-01	0.7913	87.0	0.63%	238.8	0.67%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.969e-01	0.8125	275.0	1.98%	737.3	2.06%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.939e-01	0.8125	335.0	2.41%	895.8	2.50%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.245e-01	0.8658	117.0	0.84%	325.3	0.91%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.132e-01	0.8717	91.0	0.66%	256.5	0.72%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-1.991e-01	0.8803	48.0	0.35%	140.4	0.39%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.057e-01	0.9623	5618.0	40.47%	14692.1	41.00%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-8.493e-02	0.9782	99.0	0.71%	292.5	0.82%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.376e-02	0.9850	763.0	5.50%	2072.7	5.78%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-5.311e-02	1.0000	707.0	5.09%	1935.6	5.40%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-5.004e-02	1.0000	628.0	4.52%	1727.2	4.82%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-3.642e-02	1.0000	5.0	0.04%	25.9	0.07%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.132e-02	1.0000	163.0	1.17%	484.9	1.35%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.363e-02	1.0000	880.0	6.34%	2421.3	6.76%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.188e-02	1.0000	57.0	0.41%	189.7	0.53%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.186e-02	1.0000	5.0	0.04%	27.7	0.08%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.466e-03	1.0000	43.0	0.31%	162.4	0.45%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-1.174e-03	1.0000	174.0	1.25%	559.1	1.56%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.166e-03	1.0000	53.0	0.38%	201.2	0.56%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-5.750e-04	1.0000	434.0	3.13%	1300.3	3.63%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.540e-04	1.0000	189.0	1.36%	616.3	1.72%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.160e-04	1.0000	30.0	0.22%	135.1	0.38%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.770e-04	1.0000	130.0	0.94%	446.2	1.25%