Information for motif3


Reverse Opposite:

p-value:1e-1309
log p-value:-3.015e+03
Information Content per bp:1.607
Number of Target Sequences with motif18965.0
Percentage of Target Sequences with motif36.84%
Number of Background Sequences with motif5852.9
Percentage of Background Sequences with motif21.79%
Average Position of motif in Targets100.6 +/- 55.1bp
Average Position of motif in Background100.3 +/- 116.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0097.1_Lhx6_2/Jaspar

Match Rank:1
Score:0.79
Offset:-5
Orientation:forward strand
Alignment:-----TGATTAGC----
TCCACTAATTAGCGGTT

PH0098.1_Lhx8/Jaspar

Match Rank:2
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----TGATTAGC----
ACCCCTAATTAGCGGTG

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-TGATTAGC-
CCGATTGGCT

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TGATTAGC
GGATTAGC

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:5
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TGATTAGC
TAATTAGN

PH0032.1_Evx2/Jaspar

Match Rank:6
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----TGATTAGC----
ANCGCTAATTAGCGGTN

MA0502.1_NFYB/Jaspar

Match Rank:7
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TGATTAGC------
CTGATTGGTCNATTT

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TGATTAGC----
TGATTGGCTANN

MA0132.1_Pdx1/Jaspar

Match Rank:9
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:TGATTAGC
-AATTAG-

PH0036.1_Gsx2/Jaspar

Match Rank:10
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----TGATTAGC----
AGGTTAATTAGCTGAT