Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 51495)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 26865)	% of Background Sequences with Motif
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1895	-4.365e+03	0.0000	7580.0	14.72%	1136.4	4.23%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1610	-3.709e+03	0.0000	6769.0	13.15%	1047.0	3.90%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1588	-3.658e+03	0.0000	8028.0	15.59%	1426.1	5.31%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1389	-3.199e+03	0.0000	6238.0	12.12%	1009.4	3.76%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1315	-3.029e+03	0.0000	16425.0	31.90%	4761.0	17.72%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1060	-2.441e+03	0.0000	6423.0	12.48%	1262.3	4.70%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1024	-2.359e+03	0.0000	7119.0	13.83%	1516.8	5.65%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-817	-1.883e+03	0.0000	6109.0	11.87%	1342.6	5.00%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-737	-1.698e+03	0.0000	3214.0	6.24%	498.2	1.85%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-733	-1.689e+03	0.0000	3641.0	7.07%	620.7	2.31%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-677	-1.561e+03	0.0000	6161.0	11.97%	1486.1	5.53%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-674	-1.554e+03	0.0000	2766.0	5.37%	408.5	1.52%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-657	-1.514e+03	0.0000	8834.0	17.16%	2518.9	9.38%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-557	-1.283e+03	0.0000	6958.0	13.51%	1915.3	7.13%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-512	-1.179e+03	0.0000	5472.0	10.63%	1408.0	5.24%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-509	-1.173e+03	0.0000	4103.0	7.97%	925.7	3.45%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-503	-1.159e+03	0.0000	1308.0	2.54%	126.6	0.47%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-481	-1.109e+03	0.0000	9447.0	18.35%	3031.4	11.29%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-477	-1.099e+03	0.0000	6573.0	12.77%	1869.7	6.96%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-468	-1.078e+03	0.0000	16728.0	32.49%	6312.6	23.50%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-448	-1.032e+03	0.0000	744.0	1.45%	40.2	0.15%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-429	-9.886e+02	0.0000	2150.0	4.18%	365.0	1.36%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-409	-9.431e+02	0.0000	1369.0	2.66%	169.5	0.63%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-381	-8.789e+02	0.0000	10179.0	19.77%	3533.6	13.16%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-363	-8.377e+02	0.0000	285.0	0.55%	3.0	0.01%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-346	-7.982e+02	0.0000	7294.0	14.17%	2363.4	8.80%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-334	-7.694e+02	0.0000	8669.0	16.84%	2973.9	11.07%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-318	-7.328e+02	0.0000	3411.0	6.63%	870.8	3.24%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-308	-7.101e+02	0.0000	4917.0	9.55%	1456.4	5.42%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-294	-6.779e+02	0.0000	7074.0	13.74%	2368.3	8.82%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-287	-6.621e+02	0.0000	4742.0	9.21%	1418.5	5.28%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-279	-6.425e+02	0.0000	2570.0	4.99%	612.7	2.28%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-262	-6.039e+02	0.0000	9622.0	18.69%	3558.5	13.25%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-254	-5.866e+02	0.0000	1125.0	2.19%	175.0	0.65%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-249	-5.737e+02	0.0000	1789.0	3.47%	376.7	1.40%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-236	-5.440e+02	0.0000	818.0	1.59%	104.7	0.39%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-231	-5.322e+02	0.0000	4569.0	8.87%	1440.6	5.36%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-227	-5.231e+02	0.0000	4046.0	7.86%	1235.3	4.60%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-224	-5.180e+02	0.0000	3902.0	7.58%	1182.0	4.40%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-195	-4.511e+02	0.0000	4366.0	8.48%	1420.8	5.29%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-191	-4.419e+02	0.0000	2964.0	5.76%	863.0	3.21%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-190	-4.396e+02	0.0000	754.0	1.46%	107.4	0.40%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-188	-4.339e+02	0.0000	3251.0	6.31%	980.5	3.65%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-184	-4.245e+02	0.0000	8614.0	16.73%	3313.4	12.34%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-180	-4.161e+02	0.0000	5964.0	11.58%	2135.6	7.95%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-180	-4.148e+02	0.0000	883.0	1.72%	147.4	0.55%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-178	-4.099e+02	0.0000	2492.0	4.84%	700.6	2.61%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-174	-4.021e+02	0.0000	5928.0	11.51%	2134.8	7.95%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-173	-3.990e+02	0.0000	1669.0	3.24%	404.6	1.51%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-171	-3.954e+02	0.0000	1727.0	3.35%	426.2	1.59%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-162	-3.739e+02	0.0000	1060.0	2.06%	211.9	0.79%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-153	-3.538e+02	0.0000	1402.0	2.72%	331.8	1.24%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-150	-3.458e+02	0.0000	2881.0	5.60%	895.2	3.33%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-140	-3.229e+02	0.0000	2281.0	4.43%	673.2	2.51%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-134	-3.103e+02	0.0000	8232.0	15.99%	3295.4	12.27%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-126	-2.921e+02	0.0000	14904.0	28.95%	6532.7	24.32%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-126	-2.919e+02	0.0000	9744.0	18.93%	4035.9	15.03%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-124	-2.860e+02	0.0000	17926.0	34.82%	8046.1	29.96%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-119	-2.753e+02	0.0000	4214.0	8.18%	1521.6	5.66%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-117	-2.699e+02	0.0000	1850.0	3.59%	540.7	2.01%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-114	-2.647e+02	0.0000	2614.0	5.08%	850.2	3.17%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-110	-2.536e+02	0.0000	7369.0	14.31%	2981.4	11.10%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-91	-2.104e+02	0.0000	1016.0	1.97%	261.1	0.97%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-81	-1.881e+02	0.0000	4871.0	9.46%	1928.4	7.18%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-80	-1.860e+02	0.0000	16651.0	32.34%	7654.7	28.50%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-79	-1.835e+02	0.0000	8841.0	17.17%	3808.3	14.18%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-76	-1.765e+02	0.0000	1477.0	2.87%	458.1	1.71%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-72	-1.672e+02	0.0000	2231.0	4.33%	779.9	2.90%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-68	-1.581e+02	0.0000	2316.0	4.50%	825.3	3.07%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-67	-1.545e+02	0.0000	4254.0	8.26%	1698.0	6.32%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-66	-1.532e+02	0.0000	591.0	1.15%	138.8	0.52%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-64	-1.485e+02	0.0000	7162.0	13.91%	3076.5	11.45%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-63	-1.453e+02	0.0000	154.0	0.30%	14.9	0.06%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-62	-1.450e+02	0.0000	6466.0	12.56%	2751.6	10.24%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-62	-1.430e+02	0.0000	1927.0	3.74%	674.9	2.51%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-61	-1.421e+02	0.0000	6795.0	13.20%	2915.0	10.85%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-60	-1.389e+02	0.0000	8381.0	16.28%	3686.5	13.72%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-59	-1.370e+02	0.0000	1689.0	3.28%	579.1	2.16%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-58	-1.346e+02	0.0000	5251.0	10.20%	2196.9	8.18%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-54	-1.253e+02	0.0000	521.0	1.01%	126.4	0.47%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-53	-1.243e+02	0.0000	1931.0	3.75%	696.3	2.59%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-52	-1.207e+02	0.0000	274.0	0.53%	49.0	0.18%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-51	-1.181e+02	0.0000	2907.0	5.65%	1138.0	4.24%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-49	-1.149e+02	0.0000	4138.0	8.04%	1711.9	6.37%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-45	-1.051e+02	0.0000	2876.0	5.59%	1144.1	4.26%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-43	-9.958e+01	0.0000	2985.0	5.80%	1203.1	4.48%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-40	-9.407e+01	0.0000	607.0	1.18%	174.8	0.65%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-40	-9.222e+01	0.0000	9671.0	18.78%	4449.6	16.57%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-39	-9.126e+01	0.0000	2982.0	5.79%	1216.4	4.53%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-38	-8.963e+01	0.0000	16751.0	32.54%	8022.0	29.87%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-37	-8.624e+01	0.0000	2126.0	4.13%	832.9	3.10%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-36	-8.519e+01	0.0000	2171.0	4.22%	854.8	3.18%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-30	-7.111e+01	0.0000	7110.0	13.81%	3251.9	12.11%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-30	-7.072e+01	0.0000	1665.0	3.23%	648.0	2.41%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-30	-7.019e+01	0.0000	4456.0	8.65%	1959.1	7.29%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-30	-6.939e+01	0.0000	2450.0	4.76%	1009.5	3.76%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-29	-6.838e+01	0.0000	465.0	0.90%	136.8	0.51%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-26	-6.166e+01	0.0000	863.0	1.68%	305.3	1.14%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-26	-6.089e+01	0.0000	15079.0	29.29%	7297.6	27.17%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-26	-6.086e+01	0.0000	2166.0	4.21%	893.3	3.33%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-25	-5.836e+01	0.0000	829.0	1.61%	294.3	1.10%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-24	-5.685e+01	0.0000	211.0	0.41%	49.9	0.19%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-24	-5.660e+01	0.0000	129.0	0.25%	23.4	0.09%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-24	-5.603e+01	0.0000	374.0	0.73%	109.2	0.41%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-24	-5.597e+01	0.0000	530.0	1.03%	171.2	0.64%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-23	-5.426e+01	0.0000	3452.0	6.70%	1517.4	5.65%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-22	-5.105e+01	0.0000	401.0	0.78%	123.1	0.46%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-21	-4.969e+01	0.0000	1004.0	1.95%	381.7	1.42%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-21	-4.942e+01	0.0000	1611.0	3.13%	657.7	2.45%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-20	-4.759e+01	0.0000	9482.0	18.42%	4524.4	16.84%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-20	-4.683e+01	0.0000	1473.0	2.86%	598.1	2.23%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-20	-4.609e+01	0.0000	1333.0	2.59%	535.1	1.99%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-19	-4.473e+01	0.0000	2414.0	4.69%	1044.8	3.89%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-17	-4.065e+01	0.0000	8257.0	16.04%	3940.4	14.67%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-17	-3.956e+01	0.0000	6641.0	12.90%	3135.8	11.67%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-17	-3.948e+01	0.0000	7260.0	14.10%	3445.9	12.83%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-17	-3.928e+01	0.0000	801.0	1.56%	305.3	1.14%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-16	-3.893e+01	0.0000	978.0	1.90%	385.7	1.44%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-16	-3.874e+01	0.0000	3326.0	6.46%	1500.1	5.58%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-16	-3.800e+01	0.0000	581.0	1.13%	210.5	0.78%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-16	-3.691e+01	0.0000	5708.0	11.09%	2681.6	9.98%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-14	-3.305e+01	0.0000	911.0	1.77%	364.9	1.36%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-13	-3.173e+01	0.0000	4667.0	9.06%	2185.9	8.14%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-13	-3.142e+01	0.0000	5700.0	11.07%	2701.2	10.06%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-12	-2.989e+01	0.0000	1597.0	3.10%	692.0	2.58%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-12	-2.910e+01	0.0000	3648.0	7.09%	1691.7	6.30%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-12	-2.890e+01	0.0000	13512.0	26.24%	6678.4	24.86%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-12	-2.787e+01	0.0000	4133.0	8.03%	1936.9	7.21%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-11	-2.712e+01	0.0000	619.0	1.20%	241.1	0.90%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-11	-2.701e+01	0.0000	225.0	0.44%	71.6	0.27%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-11	-2.608e+01	0.0000	8397.0	16.31%	4088.9	15.22%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-11	-2.566e+01	0.0000	1737.0	3.37%	769.0	2.86%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-10	-2.454e+01	0.0000	2730.0	5.30%	1256.4	4.68%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-9	-2.190e+01	0.0000	1274.0	2.47%	557.9	2.08%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-8	-2.023e+01	0.0000	476.0	0.92%	187.6	0.70%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-8	-2.017e+01	0.0000	6630.0	12.88%	3229.2	12.02%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-8	-1.966e+01	0.0000	376.0	0.73%	143.8	0.54%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-8	-1.930e+01	0.0000	5492.0	10.67%	2659.9	9.90%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-8	-1.905e+01	0.0000	631.0	1.23%	260.1	0.97%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-8	-1.864e+01	0.0000	1291.0	2.51%	574.2	2.14%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-7	-1.659e+01	0.0000	2108.0	4.09%	980.8	3.65%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-6	-1.586e+01	0.0000	1430.0	2.78%	650.9	2.42%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-6	-1.585e+01	0.0000	5084.0	9.87%	2474.4	9.21%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-6	-1.573e+01	0.0000	604.0	1.17%	254.2	0.95%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e-6	-1.555e+01	0.0000	33.0	0.06%	6.4	0.02%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-6	-1.533e+01	0.0000	190.0	0.37%	67.9	0.25%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-6	-1.527e+01	0.0000	243.0	0.47%	90.1	0.34%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-6	-1.462e+01	0.0000	883.0	1.72%	389.7	1.45%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-6	-1.422e+01	0.0000	53.0	0.10%	13.5	0.05%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-5	-1.345e+01	0.0000	1934.0	3.76%	907.1	3.38%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-5	-1.211e+01	0.0000	551.0	1.07%	237.7	0.89%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-4	-1.135e+01	0.0000	5553.0	10.79%	2744.8	10.22%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-4	-1.115e+01	0.0000	563.0	1.09%	246.0	0.92%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-4	-1.042e+01	0.0000	2078.0	4.04%	993.8	3.70%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-4	-9.550e+00	0.0001	546.0	1.06%	241.6	0.90%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-4	-9.216e+00	0.0002	182.0	0.35%	71.0	0.26%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-3	-9.168e+00	0.0002	548.0	1.06%	243.1	0.90%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-3	-9.055e+00	0.0002	2477.0	4.81%	1201.0	4.47%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-3	-8.504e+00	0.0003	258.0	0.50%	107.1	0.40%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-3	-8.504e+00	0.0003	258.0	0.50%	107.1	0.40%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-3	-8.404e+00	0.0003	1737.0	3.37%	833.6	3.10%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-3	-7.137e+00	0.0012	177.0	0.34%	72.9	0.27%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-2	-6.644e+00	0.0020	13288.0	25.81%	6777.8	25.23%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-2	-5.718e+00	0.0049	9680.0	18.80%	4925.3	18.34%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-2	-5.210e+00	0.0081	165.0	0.32%	70.4	0.26%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-2	-5.205e+00	0.0081	1623.0	3.15%	796.0	2.96%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-2	-5.117e+00	0.0088	2028.0	3.94%	1001.9	3.73%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-2	-5.031e+00	0.0096	41.0	0.08%	14.4	0.05%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-2	-4.873e+00	0.0111	2901.0	5.63%	1448.2	5.39%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-2	-4.692e+00	0.0133	6572.0	12.76%	3336.8	12.42%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.789e+00	0.0325	375.0	0.73%	176.6	0.66%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-3.447e+00	0.0456	8179.0	15.89%	4187.8	15.59%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-3.291e+00	0.0529	1411.0	2.74%	702.3	2.61%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-3.172e+00	0.0593	196.0	0.38%	90.7	0.34%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-2.902e+00	0.0772	483.0	0.94%	234.7	0.87%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.228e+00	0.1507	315.0	0.61%	153.6	0.57%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.217e+00	0.1514	1776.0	3.45%	900.4	3.35%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.052e+00	0.1776	81.0	0.16%	37.7	0.14%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-1.679e+00	0.2564	1607.0	3.12%	820.5	3.05%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.395e+00	0.3386	877.0	1.70%	447.4	1.67%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.280e+00	0.3779	8526.0	16.56%	4422.2	16.46%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.193e+00	0.4100	2053.0	3.99%	1059.4	3.94%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.181e+00	0.4127	2459.0	4.78%	1270.3	4.73%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.158e+00	0.4200	1404.0	2.73%	723.5	2.69%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.140e+00	0.4253	2848.0	5.53%	1473.7	5.49%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.550e-01	0.5089	7292.0	14.16%	3792.8	14.12%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-9.331e-01	0.5174	1096.0	2.13%	567.6	2.11%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-9.260e-01	0.5183	2211.0	4.29%	1147.9	4.27%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-8.923e-01	0.5333	1085.0	2.11%	562.3	2.09%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-8.426e-01	0.5575	843.0	1.64%	437.7	1.63%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.950e-01	0.6428	1231.0	2.39%	642.2	2.39%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.109e-01	0.6955	1566.0	3.04%	819.9	3.05%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-5.216e-01	0.7566	1089.0	2.12%	572.6	2.13%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-4.507e-01	0.8079	8267.0	16.06%	4328.2	16.11%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-4.448e-01	0.8086	485.0	0.94%	258.0	0.96%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.755e-01	0.8622	710.0	1.38%	377.8	1.41%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-3.132e-01	0.9129	238.0	0.46%	129.7	0.48%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-3.056e-01	0.9152	4052.0	7.87%	2134.2	7.95%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-2.956e-01	0.9198	228.0	0.44%	124.6	0.46%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-2.922e-01	0.9198	8868.0	17.22%	4657.0	17.34%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.476e-01	0.9555	901.0	1.75%	482.1	1.79%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-2.307e-01	0.9669	3307.0	6.42%	1749.7	6.51%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.089e-01	0.9834	8173.0	15.87%	4302.7	16.02%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.886e-01	0.9986	860.0	1.67%	463.7	1.73%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.809e-01	1.0000	5853.0	11.37%	3090.5	11.51%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.407e-01	1.0000	2324.0	4.51%	1240.8	4.62%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.395e-01	1.0000	24703.0	47.98%	12954.2	48.23%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-9.794e-02	1.0000	688.0	1.34%	377.5	1.41%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-8.741e-02	1.0000	1928.0	3.74%	1037.0	3.86%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-3.937e-02	1.0000	719.0	1.40%	400.9	1.49%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-3.795e-02	1.0000	4715.0	9.16%	2521.7	9.39%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-3.691e-02	1.0000	373.0	0.72%	213.9	0.80%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.116e-02	1.0000	399.0	0.77%	228.9	0.85%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.975e-02	1.0000	207.0	0.40%	124.3	0.46%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.799e-02	1.0000	2152.0	4.18%	1173.1	4.37%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.690e-02	1.0000	1078.0	2.09%	600.0	2.23%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.056e-02	1.0000	2077.0	4.03%	1138.6	4.24%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.415e-03	1.0000	204.0	0.40%	130.3	0.48%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.670e-04	1.0000	86.0	0.17%	62.1	0.23%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-4.950e-04	1.0000	3746.0	7.28%	2057.8	7.66%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.560e-04	1.0000	368.0	0.71%	230.5	0.86%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-8.300e-05	1.0000	582.0	1.13%	353.2	1.31%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.900e-05	1.0000	131.0	0.25%	95.1	0.35%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-9.000e-06	1.0000	636.0	1.24%	391.1	1.46%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-8.000e-06	1.0000	1863.0	3.62%	1070.4	3.98%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.000e-06	1.0000	17402.0	33.80%	9324.3	34.71%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.000e-06	1.0000	61.0	0.12%	55.6	0.21%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-0.000e+00	1.0000	481.0	0.93%	335.9	1.25%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-0.000e+00	1.0000	2785.0	5.41%	1649.9	6.14%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-0.000e+00	1.0000	710.0	1.38%	487.9	1.82%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	12782.0	24.83%	7087.9	26.39%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	0.000e+00	1.0000	8172.0	15.87%	4852.3	18.06%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	0.000e+00	1.0000	6149.0	11.94%	3547.9	13.21%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	0.000e+00	1.0000	808.0	1.57%	561.5	2.09%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	0.000e+00	1.0000	3667.0	7.12%	2426.3	9.03%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	0.000e+00	1.0000	1435.0	2.79%	986.0	3.67%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	0.000e+00	1.0000	949.0	1.84%	719.1	2.68%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	10503.0	20.40%	5982.6	22.27%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	0.000e+00	1.0000	2405.0	4.67%	1801.8	6.71%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	0.000e+00	1.0000	1778.0	3.45%	1237.4	4.61%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	0.000e+00	1.0000	644.0	1.25%	529.1	1.97%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	0.000e+00	1.0000	1586.0	3.08%	1050.3	3.91%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	0.000e+00	1.0000	464.0	0.90%	365.7	1.36%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	2621.0	5.09%	2212.5	8.24%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	1974.0	3.83%	1846.6	6.87%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	0.000e+00	1.0000	1765.0	3.43%	1140.5	4.25%