Information for motif20


Reverse Opposite:

p-value:1e-182
log p-value:-4.198e+02
Information Content per bp:1.927
Number of Target Sequences with motif266.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif12.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets100.0 +/- 54.2bp
Average Position of motif in Background92.3 +/- 48.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0179.1_Sp100_2/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CGTCGGGA-----
TCCGTCGCTTAAAAG

MA0470.1_E2F4/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CGTCGGGA---
GGGCGGGAAGG

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CGTCGGGA-
CWGGCGGGAA

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CGTCGGGA
VBSYGTCTGG-

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CGTCGGGA
CTGTCTGG-

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CGTCGGGA----
NNTNNTGTCTGGNNTNG

MA0469.1_E2F3/Jaspar

Match Rank:7
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------CGTCGGGA-
NNGTGNGGGCGGGAG

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CGTCGGGA---
-GGCGGGAARN

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CGTCGGGA----
TGGCGGGAAAHB

MA0471.1_E2F6/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGTCGGGA---
GGGCGGGAAGG