Information for motif3


Reverse Opposite:

p-value:1e-1174
log p-value:-2.705e+03
Information Content per bp:1.725
Number of Target Sequences with motif3933.0
Percentage of Target Sequences with motif9.13%
Number of Background Sequences with motif513.6
Percentage of Background Sequences with motif2.22%
Average Position of motif in Targets101.5 +/- 51.1bp
Average Position of motif in Background94.2 +/- 103.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:CTGATTGGYY
CCGATTGGCT

MA0502.1_NFYB/Jaspar

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:CTGATTGGYY-----
CTGATTGGTCNATTT

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:CTGATTGGYY---
-TGATTGGCTANN

MA0060.2_NFYA/Jaspar

Match Rank:4
Score:0.88
Offset:-6
Orientation:forward strand
Alignment:------CTGATTGGYY--
AGAGTGCTGATTGGTCCA

PH0026.1_Duxbl/Jaspar

Match Rank:5
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----CTGATTGGYY--
NNNNGTTGATTGGGTCG

MA0161.1_NFIC/Jaspar

Match Rank:6
Score:0.73
Offset:4
Orientation:forward strand
Alignment:CTGATTGGYY
----TTGGCA

MA0038.1_Gfi1/Jaspar

Match Rank:7
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CTGATTGGYY
CNGTGATTTN--

PH0005.1_Barhl1/Jaspar

Match Rank:8
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CTGATTGGYY---
GNNTTAATTGGTTGTT

PH0107.1_Msx2/Jaspar

Match Rank:9
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CTGATTGGYY---
ANCGCTAATTGGTCTNN

PH0089.1_Isx/Jaspar

Match Rank:10
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CTGATTGGYY--
ACTCCTAATTAGTCGT