Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 43069)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 23169)	% of Background Sequences with Motif
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1919	-4.420e+03	0.0000	6133.0	14.24%	783.1	3.38%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1686	-3.883e+03	0.0000	6326.0	14.69%	929.3	4.01%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1606	-3.700e+03	0.0000	7477.0	17.36%	1305.0	5.63%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1460	-3.364e+03	0.0000	5801.0	13.47%	887.8	3.83%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1283	-2.954e+03	0.0000	13468.0	31.26%	3771.2	16.28%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1056	-2.433e+03	0.0000	6645.0	15.43%	1389.7	6.00%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-1042	-2.400e+03	0.0000	2571.0	5.97%	244.4	1.06%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-950	-2.188e+03	0.0000	5566.0	12.92%	1108.0	4.78%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-837	-1.929e+03	0.0000	2987.0	6.93%	408.2	1.76%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-646	-1.489e+03	0.0000	4957.0	11.51%	1136.3	4.91%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-620	-1.428e+03	0.0000	3049.0	7.08%	532.5	2.30%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-584	-1.345e+03	0.0000	3647.0	8.47%	742.1	3.20%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-483	-1.113e+03	0.0000	4937.0	11.46%	1290.0	5.57%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-481	-1.109e+03	0.0000	7314.0	16.98%	2237.2	9.66%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-476	-1.096e+03	0.0000	5915.0	13.73%	1676.8	7.24%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-473	-1.091e+03	0.0000	13472.0	31.27%	5004.9	21.61%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-466	-1.075e+03	0.0000	4545.0	10.55%	1160.4	5.01%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-452	-1.043e+03	0.0000	9190.0	21.33%	3088.4	13.33%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-445	-1.026e+03	0.0000	1167.0	2.71%	117.5	0.51%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-397	-9.160e+02	0.0000	5891.0	13.68%	1773.6	7.66%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-387	-8.932e+02	0.0000	8030.0	18.64%	2696.0	11.64%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-371	-8.553e+02	0.0000	224.0	0.52%	1.4	0.01%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-368	-8.476e+02	0.0000	4098.0	9.51%	1102.6	4.76%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-368	-8.474e+02	0.0000	1713.0	3.98%	285.7	1.23%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-358	-8.260e+02	0.0000	623.0	1.45%	37.1	0.16%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-341	-7.861e+02	0.0000	1217.0	2.83%	164.2	0.71%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-304	-7.008e+02	0.0000	6011.0	13.95%	1973.1	8.52%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-291	-6.715e+02	0.0000	4155.0	9.65%	1223.7	5.28%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-259	-5.981e+02	0.0000	2851.0	6.62%	757.3	3.27%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-247	-5.696e+02	0.0000	5444.0	12.64%	1834.3	7.92%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-244	-5.626e+02	0.0000	2996.0	6.95%	831.9	3.59%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-240	-5.548e+02	0.0000	2739.0	6.36%	737.6	3.18%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-236	-5.445e+02	0.0000	6498.0	15.08%	2320.6	10.02%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-236	-5.439e+02	0.0000	7724.0	17.93%	2876.0	12.42%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-227	-5.248e+02	0.0000	690.0	1.60%	80.5	0.35%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-226	-5.206e+02	0.0000	1008.0	2.34%	162.9	0.70%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-223	-5.152e+02	0.0000	8251.0	19.15%	3151.9	13.61%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-214	-4.939e+02	0.0000	1483.0	3.44%	315.4	1.36%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-211	-4.866e+02	0.0000	1592.0	3.70%	354.7	1.53%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-205	-4.732e+02	0.0000	3630.0	8.43%	1141.7	4.93%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-202	-4.668e+02	0.0000	2006.0	4.66%	508.7	2.20%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-197	-4.546e+02	0.0000	1565.0	3.63%	357.2	1.54%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-192	-4.443e+02	0.0000	4272.0	9.92%	1434.0	6.19%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-191	-4.412e+02	0.0000	1951.0	4.53%	500.6	2.16%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-184	-4.243e+02	0.0000	8636.0	20.05%	3443.0	14.86%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-173	-4.002e+02	0.0000	7648.0	17.75%	3007.6	12.98%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-167	-3.865e+02	0.0000	3323.0	7.71%	1078.6	4.66%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-158	-3.643e+02	0.0000	3877.0	9.00%	1333.7	5.76%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-157	-3.630e+02	0.0000	3617.0	8.40%	1222.6	5.28%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-152	-3.508e+02	0.0000	6106.0	14.17%	2349.7	10.14%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-151	-3.492e+02	0.0000	1275.0	2.96%	299.7	1.29%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-147	-3.385e+02	0.0000	2050.0	4.76%	593.1	2.56%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-143	-3.310e+02	0.0000	641.0	1.49%	103.1	0.45%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-142	-3.280e+02	0.0000	7149.0	16.60%	2867.0	12.38%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-137	-3.174e+02	0.0000	4428.0	10.28%	1622.9	7.01%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-134	-3.095e+02	0.0000	1461.0	3.39%	385.0	1.66%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-126	-2.908e+02	0.0000	702.0	1.63%	131.6	0.57%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-126	-2.906e+02	0.0000	924.0	2.14%	202.5	0.87%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-125	-2.889e+02	0.0000	14460.0	33.57%	6555.7	28.30%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-125	-2.884e+02	0.0000	2059.0	4.78%	630.0	2.72%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-109	-2.526e+02	0.0000	15648.0	36.33%	7245.6	31.28%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-108	-2.500e+02	0.0000	2624.0	6.09%	895.5	3.87%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-107	-2.486e+02	0.0000	1309.0	3.04%	359.7	1.55%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-106	-2.457e+02	0.0000	7966.0	18.49%	3387.4	14.62%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-98	-2.275e+02	0.0000	12862.0	29.86%	5871.5	25.35%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-96	-2.219e+02	0.0000	5086.0	11.81%	2043.0	8.82%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-93	-2.160e+02	0.0000	2380.0	5.52%	821.2	3.55%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-86	-1.983e+02	0.0000	3847.0	8.93%	1499.0	6.47%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-84	-1.957e+02	0.0000	895.0	2.08%	232.7	1.00%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-83	-1.912e+02	0.0000	525.0	1.22%	106.7	0.46%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-80	-1.861e+02	0.0000	5150.0	11.96%	2128.0	9.19%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-71	-1.647e+02	0.0000	479.0	1.11%	100.2	0.43%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-70	-1.632e+02	0.0000	520.0	1.21%	114.6	0.49%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-69	-1.594e+02	0.0000	2142.0	4.97%	773.0	3.34%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-67	-1.557e+02	0.0000	14560.0	33.80%	6928.3	29.91%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-67	-1.548e+02	0.0000	1550.0	3.60%	522.0	2.25%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-65	-1.512e+02	0.0000	12998.0	30.17%	6132.2	26.47%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-61	-1.421e+02	0.0000	1862.0	4.32%	668.7	2.89%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-59	-1.375e+02	0.0000	7116.0	16.52%	3181.2	13.73%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-58	-1.356e+02	0.0000	1465.0	3.40%	502.6	2.17%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-58	-1.337e+02	0.0000	6304.0	14.63%	2787.3	12.03%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-57	-1.327e+02	0.0000	1923.0	4.46%	705.7	3.05%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-57	-1.326e+02	0.0000	5771.0	13.40%	2527.1	10.91%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-53	-1.221e+02	0.0000	2818.0	6.54%	1127.6	4.87%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-52	-1.204e+02	0.0000	6403.0	14.86%	2866.0	12.37%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-52	-1.200e+02	0.0000	6117.0	14.20%	2725.2	11.76%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-49	-1.145e+02	0.0000	8366.0	19.42%	3866.8	16.69%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-49	-1.130e+02	0.0000	5818.0	13.51%	2593.9	11.20%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-48	-1.110e+02	0.0000	7062.0	16.39%	3218.9	13.90%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-47	-1.093e+02	0.0000	144.0	0.33%	17.7	0.08%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-46	-1.081e+02	0.0000	3641.0	8.45%	1540.7	6.65%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-46	-1.063e+02	0.0000	8187.0	19.01%	3798.5	16.40%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-43	-1.009e+02	0.0000	3144.0	7.30%	1315.9	5.68%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-41	-9.484e+01	0.0000	2376.0	5.52%	962.9	4.16%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-38	-8.827e+01	0.0000	486.0	1.13%	136.5	0.59%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-33	-7.640e+01	0.0000	2155.0	5.00%	888.2	3.83%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-32	-7.395e+01	0.0000	742.0	1.72%	250.0	1.08%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-32	-7.369e+01	0.0000	2615.0	6.07%	1112.8	4.80%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-31	-7.210e+01	0.0000	4109.0	9.54%	1845.7	7.97%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-31	-7.183e+01	0.0000	432.0	1.00%	125.5	0.54%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-30	-7.116e+01	0.0000	3985.0	9.25%	1786.1	7.71%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-30	-7.100e+01	0.0000	3560.0	8.26%	1577.2	6.81%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-30	-7.020e+01	0.0000	263.0	0.61%	63.5	0.27%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-30	-6.937e+01	0.0000	21393.0	49.66%	10863.4	46.90%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-29	-6.728e+01	0.0000	1556.0	3.61%	622.7	2.69%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-27	-6.320e+01	0.0000	1463.0	3.40%	586.0	2.53%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-26	-6.214e+01	0.0000	658.0	1.53%	225.4	0.97%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-26	-6.206e+01	0.0000	1091.0	2.53%	416.5	1.80%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-26	-6.199e+01	0.0000	198.0	0.46%	44.6	0.19%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-26	-6.063e+01	0.0000	5747.0	13.34%	2699.1	11.65%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-26	-6.019e+01	0.0000	1878.0	4.36%	785.8	3.39%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-26	-6.007e+01	0.0000	4926.0	11.44%	2286.9	9.87%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-25	-5.954e+01	0.0000	343.0	0.80%	98.9	0.43%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-24	-5.702e+01	0.0000	1421.0	3.30%	575.7	2.49%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-24	-5.679e+01	0.0000	736.0	1.71%	264.8	1.14%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-23	-5.453e+01	0.0000	1258.0	2.92%	503.8	2.17%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-22	-5.273e+01	0.0000	407.0	0.94%	128.2	0.55%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-22	-5.268e+01	0.0000	2094.0	4.86%	903.6	3.90%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-21	-4.997e+01	0.0000	3914.0	9.09%	1808.8	7.81%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-19	-4.476e+01	0.0000	5018.0	11.65%	2383.5	10.29%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-19	-4.474e+01	0.0000	858.0	1.99%	333.1	1.44%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-18	-4.262e+01	0.0000	971.0	2.25%	388.7	1.68%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-18	-4.158e+01	0.0000	1077.0	2.50%	439.1	1.90%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-17	-4.028e+01	0.0000	2379.0	5.52%	1072.0	4.63%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-16	-3.914e+01	0.0000	3792.0	8.80%	1781.6	7.69%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-16	-3.733e+01	0.0000	490.0	1.14%	177.9	0.77%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-16	-3.711e+01	0.0000	2119.0	4.92%	951.3	4.11%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-15	-3.591e+01	0.0000	1883.0	4.37%	838.1	3.62%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-14	-3.453e+01	0.0000	340.0	0.79%	115.4	0.50%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-14	-3.385e+01	0.0000	1183.0	2.75%	503.5	2.17%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-14	-3.320e+01	0.0000	211.0	0.49%	63.6	0.27%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-13	-3.088e+01	0.0000	2560.0	5.94%	1188.2	5.13%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-13	-3.051e+01	0.0000	4420.0	10.26%	2133.3	9.21%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-13	-3.004e+01	0.0000	3729.0	8.66%	1783.0	7.70%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-12	-2.954e+01	0.0000	5607.0	13.02%	2748.8	11.87%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-12	-2.931e+01	0.0000	1298.0	3.01%	568.8	2.46%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-12	-2.793e+01	0.0000	779.0	1.81%	322.3	1.39%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-12	-2.780e+01	0.0000	122.0	0.28%	32.6	0.14%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-11	-2.737e+01	0.0000	874.0	2.03%	369.0	1.59%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-11	-2.726e+01	0.0000	2455.0	5.70%	1147.7	4.95%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-11	-2.665e+01	0.0000	2441.0	5.67%	1142.5	4.93%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-11	-2.643e+01	0.0000	221.0	0.51%	72.2	0.31%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-10	-2.475e+01	0.0000	901.0	2.09%	386.8	1.67%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-10	-2.461e+01	0.0000	4755.0	11.04%	2332.8	10.07%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-10	-2.436e+01	0.0000	433.0	1.01%	167.7	0.72%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-9	-2.089e+01	0.0000	1700.0	3.95%	789.3	3.41%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-9	-2.084e+01	0.0000	701.0	1.63%	298.3	1.29%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-8	-2.068e+01	0.0000	478.0	1.11%	193.2	0.83%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-7	-1.840e+01	0.0000	169.0	0.39%	57.4	0.25%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-7	-1.786e+01	0.0000	7180.0	16.67%	3636.0	15.70%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-7	-1.632e+01	0.0000	741.0	1.72%	327.2	1.41%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-7	-1.612e+01	0.0000	554.0	1.29%	237.3	1.02%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-6	-1.460e+01	0.0000	535.0	1.24%	231.2	1.00%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-5	-1.379e+01	0.0000	7389.0	17.15%	3776.0	16.30%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-5	-1.318e+01	0.0000	3307.0	7.68%	1644.5	7.10%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-5	-1.278e+01	0.0000	570.0	1.32%	252.5	1.09%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-5	-1.154e+01	0.0000	51.0	0.12%	14.5	0.06%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-4	-1.134e+01	0.0000	8355.0	19.40%	4308.9	18.60%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-4	-1.085e+01	0.0000	1541.0	3.58%	746.2	3.22%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-4	-9.682e+00	0.0001	4790.0	11.12%	2443.0	10.55%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-4	-9.245e+00	0.0001	1202.0	2.79%	580.3	2.51%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-3	-8.755e+00	0.0002	11102.0	25.77%	5795.4	25.02%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-3	-8.564e+00	0.0003	1861.0	4.32%	922.0	3.98%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-3	-8.059e+00	0.0005	152.0	0.35%	61.9	0.27%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-3	-7.432e+00	0.0009	337.0	0.78%	151.5	0.65%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-6.716e+00	0.0018	466.0	1.08%	217.1	0.94%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e-2	-6.493e+00	0.0022	765.0	1.78%	369.7	1.60%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-2	-6.429e+00	0.0024	1069.0	2.48%	526.0	2.27%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-6.334e+00	0.0026	163.0	0.38%	69.9	0.30%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-6.079e+00	0.0033	430.0	1.00%	201.3	0.87%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-2	-5.910e+00	0.0039	37.0	0.09%	12.3	0.05%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-2	-5.893e+00	0.0039	180.0	0.42%	79.0	0.34%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-2	-5.784e+00	0.0044	6902.0	16.02%	3601.0	15.55%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-5.766e+00	0.0044	326.0	0.76%	150.7	0.65%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-5.481e+00	0.0059	1395.0	3.24%	699.8	3.02%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-2	-5.472e+00	0.0059	10979.0	25.49%	5777.0	24.94%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-2	-5.463e+00	0.0059	1514.0	3.51%	761.5	3.29%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-2	-5.148e+00	0.0080	14959.0	34.73%	7910.3	34.15%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-5.040e+00	0.0089	1897.0	4.40%	964.7	4.16%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-4.843e+00	0.0108	459.0	1.07%	220.9	0.95%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-4.774e+00	0.0115	486.0	1.13%	234.1	1.01%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-4.395e+00	0.0167	161.0	0.37%	72.8	0.31%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-4.311e+00	0.0180	54.0	0.13%	21.4	0.09%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e-1	-3.844e+00	0.0286	26.0	0.06%	9.0	0.04%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.529e+00	0.0390	329.0	0.76%	159.1	0.69%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.249e+00	0.0514	2041.0	4.74%	1056.0	4.56%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-3.224e+00	0.0523	1942.0	4.51%	1004.2	4.33%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-2.858e+00	0.0751	1516.0	3.52%	783.3	3.38%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-2.836e+00	0.0763	9098.0	21.12%	4821.5	20.81%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.813e+00	0.0777	800.0	1.86%	407.0	1.76%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-2.670e+00	0.0892	1057.0	2.45%	543.7	2.35%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-2.544e+00	0.1006	338.0	0.78%	168.0	0.73%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e-1	-2.445e+00	0.1106	1364.0	3.17%	707.3	3.05%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.245e+00	0.1343	4464.0	10.36%	2358.5	10.18%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.041e+00	0.1639	602.0	1.40%	309.6	1.34%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.951e+00	0.1775	230.0	0.53%	115.5	0.50%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.951e+00	0.1775	230.0	0.53%	115.5	0.50%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.729e+00	0.2204	247.0	0.57%	125.3	0.54%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.625e+00	0.2434	956.0	2.22%	501.0	2.16%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.228e+00	0.3604	2941.0	6.83%	1566.7	6.76%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.193e+00	0.3713	1734.0	4.03%	921.1	3.98%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.050e+00	0.4262	344.0	0.80%	181.5	0.78%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-9.476e-01	0.4698	1734.0	4.03%	927.0	4.00%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-8.094e-01	0.5368	1728.0	4.01%	926.9	4.00%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-6.442e-01	0.6301	204.0	0.47%	110.3	0.48%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-4.956e-01	0.7275	1409.0	3.27%	763.1	3.29%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-3.950e-01	0.8006	1349.0	3.13%	734.1	3.17%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-3.787e-01	0.8099	67.0	0.16%	38.1	0.16%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.019e-01	0.8703	613.0	1.42%	338.8	1.46%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.954e-01	0.8718	1657.0	3.85%	906.0	3.91%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.908e-01	0.8718	1795.0	4.17%	980.5	4.23%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-2.291e-01	0.9228	2124.0	4.93%	1162.0	5.02%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.537e-01	0.9903	1378.0	3.20%	762.8	3.29%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.422e-01	0.9971	2816.0	6.54%	1545.5	6.67%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.389e-01	0.9971	10991.0	25.51%	5965.0	25.75%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-6.427e-02	1.0000	201.0	0.47%	120.9	0.52%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-4.051e-02	1.0000	421.0	0.98%	246.9	1.07%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.916e-02	1.0000	485.0	1.13%	282.5	1.22%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.983e-02	1.0000	113.0	0.26%	72.5	0.31%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.571e-02	1.0000	1629.0	3.78%	919.0	3.97%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.459e-02	1.0000	736.0	1.71%	428.0	1.85%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-4.979e-03	1.0000	1395.0	3.24%	802.4	3.46%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-3.995e-03	1.0000	2619.0	6.08%	1480.9	6.39%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.795e-03	1.0000	7182.0	16.67%	3978.1	17.17%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.886e-03	1.0000	170.0	0.39%	113.1	0.49%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.852e-03	1.0000	931.0	2.16%	549.5	2.37%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-8.300e-04	1.0000	1183.0	2.75%	696.0	3.00%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.750e-04	1.0000	72.0	0.17%	55.9	0.24%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-5.300e-04	1.0000	591.0	1.37%	362.1	1.56%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.830e-04	1.0000	407.0	0.94%	258.9	1.12%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.420e-04	1.0000	170.0	0.39%	119.3	0.51%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-0.000e+00	1.0000	6130.0	14.23%	3490.6	15.07%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-0.000e+00	1.0000	6891.0	16.00%	3913.3	16.89%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-0.000e+00	1.0000	837.0	1.94%	534.1	2.31%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-0.000e+00	1.0000	718.0	1.67%	469.1	2.03%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-0.000e+00	1.0000	581.0	1.35%	389.9	1.68%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-0.000e+00	1.0000	2134.0	4.95%	1291.3	5.57%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-0.000e+00	1.0000	2082.0	4.83%	1286.6	5.55%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-0.000e+00	1.0000	4990.0	11.58%	2943.1	12.70%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	7665.0	17.79%	4439.8	19.17%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	0.000e+00	1.0000	6651.0	15.44%	3993.6	17.24%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	0.000e+00	1.0000	389.0	0.90%	316.7	1.37%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	2275.0	5.28%	1713.5	7.40%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	1706.0	3.96%	1382.4	5.97%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	0.000e+00	1.0000	587.0	1.36%	495.5	2.14%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	0.000e+00	1.0000	1492.0	3.46%	1014.9	4.38%