Information for motif2


Reverse Opposite:

p-value:1e-617
log p-value:-1.421e+03
Information Content per bp:1.766
Number of Target Sequences with motif1360.0
Percentage of Target Sequences with motif7.59%
Number of Background Sequences with motif170.0
Percentage of Background Sequences with motif1.19%
Average Position of motif in Targets99.2 +/- 46.5bp
Average Position of motif in Background97.3 +/- 75.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.92
Offset:-7
Orientation:forward strand
Alignment:-------GCCCYCTRGTGG-
CNNBRGCGCCCCCTGSTGGC

MA0139.1_CTCF/Jaspar

Match Rank:2
Score:0.91
Offset:-4
Orientation:reverse strand
Alignment:----GCCCYCTRGTGG---
TAGCGCCCCCTGGTGGCCA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:3
Score:0.89
Offset:-5
Orientation:forward strand
Alignment:-----GCCCYCTRGTGG---
ANAGTGCCACCTGGTGGCCA

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GCCCYCTRGTGG-
-CCCCCTGCTGTG

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------GCCCYCTRGTGG
GGTCCCGCCCCCTTCTC-

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCCYCTRGTGG-
CACCCCCGGGGGGG

MA0057.1_MZF1_5-13/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCCCYCTRGTGG
TTCCCCCTAC---

PB0103.1_Zic3_1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCCCYCTRGTGG--
CCCCCCCGGGGGGGT

PB0102.1_Zic2_1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCCCYCTRGTGG--
CCCCCCCGGGGGGGT

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCCCYCTRGTGG
GCCATCTGTT--