Information for motif20


Reverse Opposite:

p-value:1e-33
log p-value:-7.697e+01
Information Content per bp:1.954
Number of Target Sequences with motif69.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets103.0 +/- 54.1bp
Average Position of motif in Background86.3 +/- 49.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0597.1_THAP1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCTGCCAGCA
-CTGCCCGCA

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GCTGCCAGCA--
SCTGTCARCACC

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCTGCCAGCA
-TTGCCAAG-

MA0161.1_NFIC/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCTGCCAGCA
--TGCCAA--

MA0498.1_Meis1/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GCTGCCAGCA
NNNTGAGTGACAGCT

MA0117.1_Mafb/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCTGCCAGCA
GCTGACGC--

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCTGCCAGCA----
ACTATGCCAACCTACC

PB0155.1_Osr2_2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCTGCCAGCA--
ACTTGCTACCTACACC

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCTGCCAGCA
NGCTN------

PB0154.1_Osr1_2/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCTGCCAGCA--
ACATGCTACCTAATAC