Information for motif25


Reverse Opposite:

p-value:1e-28
log p-value:-6.578e+01
Information Content per bp:1.578
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets95.9 +/- 49.3bp
Average Position of motif in Background150.1 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0138.1_Pitx2/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----ACTAATCCCTCC-
GNNNATTAATCCCTNCN

PH0130.1_Otx2/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----ACTAATCCCTCC-
GANNATTAATCCCTNNN

PH0129.1_Otx1/Jaspar

Match Rank:3
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----ACTAATCCCTCC-
NNNAATTAATCCCCNCN

PH0137.1_Pitx1/Jaspar

Match Rank:4
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---ACTAATCCCTCC--
NTTGTTAATCCCTCTNN

PH0125.1_Obox5_2/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----ACTAATCCCTCC-
GATAATTAATCCCTCTT

PH0139.1_Pitx3/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----ACTAATCCCTCC
GNNAGCTAATCCCCCN

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.67
Offset:2
Orientation:forward strand
Alignment:ACTAATCCCTCC
--TAATCCCN--

PH0124.1_Obox5_1/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----ACTAATCCCTCC-
NANANTTAATCCCNNNN

PH0123.1_Obox3/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---ACTAATCCCTCC--
ATAGTTAATCCCCCNNA

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ACTAATCCCTCC-
AATCGTTAATCCCTTTA