Information for motif3


Reverse Opposite:

p-value:1e-265
log p-value:-6.109e+02
Information Content per bp:1.626
Number of Target Sequences with motif7438.0
Percentage of Target Sequences with motif41.54%
Number of Background Sequences with motif4177.6
Percentage of Background Sequences with motif29.30%
Average Position of motif in Targets100.2 +/- 55.2bp
Average Position of motif in Background100.7 +/- 62.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-GGTGTTAA-
AGGTGTTAAT

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:2
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-GGTGTTAA-
AGGTGTGAAM

PB0013.1_Eomes_1/Jaspar

Match Rank:3
Score:0.79
Offset:-5
Orientation:forward strand
Alignment:-----GGTGTTAA----
GAAAAGGTGTGAAAATT

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GGTGTTAA
AGGTGTCA-

MA0009.1_T/Jaspar

Match Rank:5
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---GGTGTTAA
CTAGGTGTGAA

PB0109.1_Bbx_2/Jaspar

Match Rank:6
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GGTGTTAA------
NNNNCTGTTAACNNTNN

PH0157.1_Rhox11_1/Jaspar

Match Rank:7
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GGTGTTAA----
AAGACGCTGTAAAGCGA

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GGTGTTAA--
NBWGATAAGR

PH0158.1_Rhox11_2/Jaspar

Match Rank:9
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----GGTGTTAA----
AGGACGCTGTAAAGGGA

PB0022.1_Gata5_1/Jaspar

Match Rank:10
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GGTGTTAA------
TAAACTGATAAGAAGAT