Information for motif35


Reverse Opposite:

p-value:1e-16
log p-value:-3.701e+01
Information Content per bp:1.856
Number of Target Sequences with motif133.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif47.8
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets110.3 +/- 55.2bp
Average Position of motif in Background111.4 +/- 72.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0067.1_Pax2/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CCGTGACG
NCGTGACN

CRE(bZIP)/Promoter/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCGTGACG----
CGGTGACGTCAC

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CCGTGACG-
---TGACGT

PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------CCGTGACG
TCAGNGAGCGTGAC-

MA0018.2_CREB1/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCGTGACG---
---TGACGTCA

PB0027.1_Gmeb1_1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCGTGACG--------
GAGTGTACGTAAGATGG

PB0004.1_Atf1_1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CCGTGACG-------
NCGATGACGTCATCGN

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CCGTGACG----
----TACGTGCV

PB0046.1_Mybl1_1/Jaspar

Match Rank:9
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------CCGTGACG--
TTGAAAACCGTTAATTT

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CCGTGACG----
CTACTTGGATACGGAAT