Information for motif36


Reverse Opposite:

p-value:1e-13
log p-value:-3.034e+01
Information Content per bp:1.530
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets107.2 +/- 57.6bp
Average Position of motif in Background52.2 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATCGCCG-
GNNAGCTAATCCCCCN

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTAATCGCCG
CTAATKGV--

PB0185.1_Tcf1_2/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTAATCGCCG---
NNTAATCCNGNCNN

MA0467.1_Crx/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTAATCGCCG-
CTAATCCTCTT

PH0015.1_Crx/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CTAATCGCCG---
AGGCTAATCCCCAANG

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTAATCGCCG
GCTAATCC---

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTAATCGCCG
GTTAATGGCC-

PH0123.1_Obox3/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CTAATCGCCG---
ATAGTTAATCCCCCNNA

MA0132.1_Pdx1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTAATCGCCG
CTAATT----

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CTAATCGCCG--
AATCGTTAATCCCTTTA