Information for motif37


Reverse Opposite:

p-value:1e-12
log p-value:-2.930e+01
Information Content per bp:1.530
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets89.9 +/- 48.4bp
Average Position of motif in Background91.7 +/- 13.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---GGGTCGTC-
CGTGGGTGGTCC

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----GGGTCGTC-----
NNANTGGTGGTCTTNNN

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------GGGTCGTC--
CGCGCCGGGTCACGTA

PB0025.1_Glis2_1/Jaspar

Match Rank:4
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------GGGTCGTC-
NTNTGGGGGGTCNNNA

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------GGGTCGTC--
AGAGCGGGGTCAAGTA

PH0067.1_Hoxc12/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGGTCGTC-------
TTAGGTCGTAAAATTTC

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGGTCGTC
AGGTCA--

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------GGGTCGTC---
NTNNNGGGGTCANGNNN

PB0030.1_Hnf4a_1/Jaspar

Match Rank:9
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------GGGTCGTC---
CTCCAGGGGTCAATTGA

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------GGGTCGTC---
NNNAAGGGGGCGGGNNN