| p-value: | 1e-216 |
| log p-value: | -4.987e+02 |
| Information Content per bp: | 1.615 |
| Number of Target Sequences with motif | 3304.0 |
| Percentage of Target Sequences with motif | 18.45% |
| Number of Background Sequences with motif | 1506.4 |
| Percentage of Background Sequences with motif | 10.56% |
| Average Position of motif in Targets | 101.4 +/- 54.1bp |
| Average Position of motif in Background | 99.9 +/- 60.3bp |
| Strand Bias (log2 ratio + to - strand density) | 0.0 |
| Multiplicity (# of sites on avg that occur together) | 1.18 |
| Motif File: | file (matrix)
reverse opposite |
| PDF Format Logos: | forward logo
reverse opposite |
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer
| Match Rank: | 1 |
| Score: | 0.96
| | Offset: | 0
| | Orientation: | reverse strand |
| Alignment: | GCTAATTA
NCTAATTA |
|
|
|
PB0031.1_Hoxa3_1/Jaspar
| Match Rank: | 2 |
| Score: | 0.92
| | Offset: | -4
| | Orientation: | forward strand |
| Alignment: | ----GCTAATTA--
TGGAGGTAATTAAC |
|
|
|
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer
| Match Rank: | 3 |
| Score: | 0.92
| | Offset: | 1
| | Orientation: | reverse strand |
| Alignment: | GCTAATTA---
-YTAATTAVHT |
|
|
|
PH0131.1_Pax4/Jaspar
| Match Rank: | 4 |
| Score: | 0.91
| | Offset: | -4
| | Orientation: | reverse strand |
| Alignment: | ----GCTAATTA-----
NNGNGCTAATTAGNTNA |
|
|
|
PH0036.1_Gsx2/Jaspar
| Match Rank: | 5 |
| Score: | 0.91
| | Offset: | -4
| | Orientation: | reverse strand |
| Alignment: | ----GCTAATTA----
NTNNGCTAATTANCNT |
|
|
|
PH0050.1_Hoxa3/Jaspar
| Match Rank: | 6 |
| Score: | 0.91
| | Offset: | -4
| | Orientation: | forward strand |
| Alignment: | ----GCTAATTA--
TTGAGGTAATTAGT |
|
|
|
PH0045.1_Hoxa1/Jaspar
| Match Rank: | 7 |
| Score: | 0.90
| | Offset: | -4
| | Orientation: | forward strand |
| Alignment: | ----GCTAATTA----
CTGAGCTAATTACCGT |
|
|
|
PH0074.1_Hoxd1/Jaspar
| Match Rank: | 8 |
| Score: | 0.90
| | Offset: | -4
| | Orientation: | reverse strand |
| Alignment: | ----GCTAATTA-----
NNNAGCTAATTAGCTTA |
|
|
|
PH0175.1_Vax2/Jaspar
| Match Rank: | 9 |
| Score: | 0.90
| | Offset: | -4
| | Orientation: | forward strand |
| Alignment: | ----GCTAATTA----
GTGCACTAATTAAGAC |
|
|
|
PH0081.1_Pdx1/Jaspar
| Match Rank: | 10 |
| Score: | 0.89
| | Offset: | -4
| | Orientation: | reverse strand |
| Alignment: | ----GCTAATTA----
NTGNGCTAATTACCNN |
|
|
|
