Information for motif5


Reverse Opposite:

p-value:1e-180
log p-value:-4.157e+02
Information Content per bp:1.670
Number of Target Sequences with motif3604.0
Percentage of Target Sequences with motif20.13%
Number of Background Sequences with motif1783.2
Percentage of Background Sequences with motif12.51%
Average Position of motif in Targets99.4 +/- 54.1bp
Average Position of motif in Background100.8 +/- 78.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--TCCYGCWGHG---
TNTCCTGCTGTGNNG

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--TCCYGCWGHG---
NNTCCTGCTGTGNNN

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--TCCYGCWGHG
CCCCCTGCTGTG

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TCCYGCWGHG---
TCNCCTGCTGNGNNN

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TCCYGCWGHG
ANCAGCTG--

MA0522.1_Tcf3/Jaspar

Match Rank:6
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TCCYGCWGHG
NTGCAGCTGTG

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:7
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TCCYGCWGHG-
-HCAGCTGDTN

MA0461.1_Atoh1/Jaspar

Match Rank:8
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TCCYGCWGHG
GCCATCTG--

MA0048.1_NHLH1/Jaspar

Match Rank:9
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TCCYGCWGHG-
NCGCAGCTGCGN

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TCCYGCWGHG-
-NCAGCTGCTG