Information for motif7


Reverse Opposite:

p-value:1e-104
log p-value:-2.403e+02
Information Content per bp:1.780
Number of Target Sequences with motif2186.0
Percentage of Target Sequences with motif12.21%
Number of Background Sequences with motif1078.8
Percentage of Background Sequences with motif7.57%
Average Position of motif in Targets100.2 +/- 53.9bp
Average Position of motif in Background98.1 +/- 60.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.89
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTGWTC----
NNNTCCTTTGTTCTNNN

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.88
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTGWTC----
TNNTCCTTTGTTCTNNT

MA0515.1_Sox6/Jaspar

Match Rank:3
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-CTTTGWTC-
CCATTGTTTT

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--CTTTGWTC
NCCATTGTTC

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CTTTGWTC
CCWTTGTY-

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:6
Score:0.84
Offset:-5
Orientation:forward strand
Alignment:-----CTTTGWTC----
ATTTCCTTTGATCTATA

MA0442.1_SOX10/Jaspar

Match Rank:7
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CTTTGWTC
CTTTGT--

PB0040.1_Lef1_1/Jaspar

Match Rank:8
Score:0.84
Offset:-5
Orientation:forward strand
Alignment:-----CTTTGWTC----
AATCCCTTTGATCTATC

MA0514.1_Sox3/Jaspar

Match Rank:9
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-CTTTGWTC-
CCTTTGTTTT

MA0143.3_Sox2/Jaspar

Match Rank:10
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-CTTTGWTC
CCTTTGTT-