Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 17912)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 14318)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-749	-1.725e+03	0.0000	1467.0	8.19%	157.5	1.10%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-678	-1.563e+03	0.0000	4001.0	22.34%	1224.4	8.59%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-669	-1.540e+03	0.0000	3406.0	19.02%	941.4	6.60%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-625	-1.441e+03	0.0000	1674.0	9.35%	261.4	1.83%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-572	-1.319e+03	0.0000	3046.0	17.01%	859.4	6.03%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-441	-1.018e+03	0.0000	3540.0	19.77%	1261.2	8.85%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-321	-7.398e+02	0.0000	1538.0	8.59%	393.6	2.76%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-241	-5.570e+02	0.0000	2400.0	13.40%	923.5	6.48%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-179	-4.143e+02	0.0000	4944.0	27.61%	2682.8	18.81%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-163	-3.768e+02	0.0000	3442.0	19.22%	1723.1	12.08%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-157	-3.617e+02	0.0000	4662.0	26.03%	2563.0	17.97%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-145	-3.341e+02	0.0000	2439.0	13.62%	1133.8	7.95%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-142	-3.279e+02	0.0000	7416.0	41.41%	4610.4	32.33%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-136	-3.145e+02	0.0000	1688.0	9.43%	701.5	4.92%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-129	-2.976e+02	0.0000	2361.0	13.18%	1123.5	7.88%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-120	-2.774e+02	0.0000	3172.0	17.71%	1672.9	11.73%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-115	-2.654e+02	0.0000	1532.0	8.56%	652.3	4.57%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-109	-2.516e+02	0.0000	4780.0	26.69%	2824.4	19.81%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-95	-2.206e+02	0.0000	4684.0	26.16%	2814.1	19.74%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-92	-2.140e+02	0.0000	2040.0	11.39%	1017.3	7.13%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-88	-2.049e+02	0.0000	3759.0	20.99%	2188.3	15.35%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-86	-1.981e+02	0.0000	3261.0	18.21%	1854.2	13.00%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-84	-1.953e+02	0.0000	3996.0	22.32%	2373.5	16.65%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-81	-1.888e+02	0.0000	7914.0	44.20%	5300.9	37.18%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-79	-1.823e+02	0.0000	9804.0	54.75%	6800.4	47.69%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-74	-1.711e+02	0.0000	2519.0	14.07%	1393.3	9.77%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-69	-1.609e+02	0.0000	6123.0	34.19%	4009.6	28.12%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-69	-1.593e+02	0.0000	881.0	4.92%	367.7	2.58%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-62	-1.432e+02	0.0000	2631.0	14.69%	1518.4	10.65%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-59	-1.366e+02	0.0000	3727.0	20.81%	2305.6	16.17%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-53	-1.221e+02	0.0000	81.0	0.45%	6.1	0.04%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-48	-1.121e+02	0.0000	1018.0	5.68%	498.0	3.49%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-47	-1.095e+02	0.0000	635.0	3.55%	269.6	1.89%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-44	-1.019e+02	0.0000	7552.0	42.17%	5285.7	37.07%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-42	-9.879e+01	0.0000	494.0	2.76%	198.0	1.39%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-42	-9.790e+01	0.0000	2989.0	16.69%	1868.8	13.11%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-41	-9.536e+01	0.0000	307.0	1.71%	101.9	0.71%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-40	-9.434e+01	0.0000	3391.0	18.94%	2168.5	15.21%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-39	-9.111e+01	0.0000	276.0	1.54%	88.9	0.62%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-39	-9.021e+01	0.0000	616.0	3.44%	276.2	1.94%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-35	-8.112e+01	0.0000	602.0	3.36%	277.3	1.94%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-34	-8.013e+01	0.0000	2950.0	16.47%	1887.2	13.24%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-32	-7.403e+01	0.0000	2585.0	14.44%	1640.4	11.50%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-29	-6.872e+01	0.0000	1622.0	9.06%	970.4	6.81%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-28	-6.613e+01	0.0000	494.0	2.76%	228.0	1.60%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-27	-6.343e+01	0.0000	1907.0	10.65%	1183.5	8.30%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-26	-6.194e+01	0.0000	225.0	1.26%	79.8	0.56%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-26	-6.059e+01	0.0000	1210.0	6.76%	703.2	4.93%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-24	-5.585e+01	0.0000	312.0	1.74%	131.2	0.92%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-24	-5.566e+01	0.0000	287.0	1.60%	117.7	0.83%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-23	-5.431e+01	0.0000	1730.0	9.66%	1081.4	7.58%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-23	-5.359e+01	0.0000	2471.0	13.80%	1618.5	11.35%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-22	-5.152e+01	0.0000	807.0	4.51%	448.0	3.14%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-20	-4.789e+01	0.0000	1043.0	5.82%	615.4	4.32%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-20	-4.729e+01	0.0000	1371.0	7.66%	845.2	5.93%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-18	-4.287e+01	0.0000	3258.0	18.19%	2241.4	15.72%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-17	-3.940e+01	0.0000	711.0	3.97%	406.7	2.85%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-17	-3.923e+01	0.0000	3863.0	21.57%	2714.4	19.04%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-16	-3.708e+01	0.0000	2402.0	13.41%	1626.8	11.41%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-15	-3.684e+01	0.0000	2782.0	15.54%	1910.1	13.40%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-15	-3.634e+01	0.0000	2004.0	11.19%	1335.9	9.37%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-15	-3.628e+01	0.0000	83.0	0.46%	23.2	0.16%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-15	-3.535e+01	0.0000	594.0	3.32%	335.5	2.35%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-15	-3.498e+01	0.0000	1805.0	10.08%	1194.2	8.38%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-13	-3.199e+01	0.0000	3878.0	21.66%	2762.8	19.38%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-13	-3.182e+01	0.0000	1713.0	9.57%	1138.6	7.98%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-12	-2.991e+01	0.0000	2135.0	11.92%	1457.3	10.22%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-12	-2.953e+01	0.0000	1377.0	7.69%	901.9	6.33%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-12	-2.806e+01	0.0000	952.0	5.32%	600.7	4.21%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-11	-2.758e+01	0.0000	2010.0	11.22%	1374.5	9.64%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-11	-2.641e+01	0.0000	3186.0	17.79%	2265.5	15.89%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-11	-2.606e+01	0.0000	496.0	2.77%	287.4	2.02%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-10	-2.409e+01	0.0000	116.0	0.65%	47.8	0.34%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-10	-2.339e+01	0.0000	530.0	2.96%	316.6	2.22%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-9	-2.254e+01	0.0000	256.0	1.43%	134.4	0.94%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-9	-2.246e+01	0.0000	460.0	2.57%	270.2	1.89%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-9	-2.236e+01	0.0000	1040.0	5.81%	681.4	4.78%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-9	-2.233e+01	0.0000	833.0	4.65%	532.1	3.73%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-9	-2.189e+01	0.0000	296.0	1.65%	161.2	1.13%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-9	-2.181e+01	0.0000	1124.0	6.28%	744.2	5.22%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-9	-2.155e+01	0.0000	1032.0	5.76%	678.9	4.76%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-8	-2.063e+01	0.0000	184.0	1.03%	91.6	0.64%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-8	-2.056e+01	0.0000	480.0	2.68%	288.7	2.02%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-8	-1.983e+01	0.0000	1212.0	6.77%	816.4	5.73%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-8	-1.943e+01	0.0000	1298.0	7.25%	881.0	6.18%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-8	-1.894e+01	0.0000	57.0	0.32%	19.7	0.14%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-7	-1.790e+01	0.0000	120.0	0.67%	56.0	0.39%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-7	-1.785e+01	0.0000	4246.0	23.71%	3135.5	21.99%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-7	-1.769e+01	0.0000	2713.0	15.15%	1956.9	13.72%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-7	-1.738e+01	0.0000	129.0	0.72%	61.1	0.43%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-7	-1.680e+01	0.0000	2362.0	13.19%	1694.3	11.88%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-7	-1.646e+01	0.0000	124.0	0.69%	59.4	0.42%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-7	-1.642e+01	0.0000	2795.0	15.61%	2027.6	14.22%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-6	-1.577e+01	0.0000	297.0	1.66%	173.9	1.22%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-6	-1.516e+01	0.0000	1311.0	7.32%	910.0	6.38%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-6	-1.496e+01	0.0000	778.0	4.34%	517.3	3.63%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-6	-1.494e+01	0.0000	1758.0	9.82%	1248.0	8.75%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-6	-1.471e+01	0.0000	1300.0	7.26%	904.3	6.34%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-6	-1.429e+01	0.0000	502.0	2.80%	320.4	2.25%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-6	-1.400e+01	0.0000	1043.0	5.82%	716.7	5.03%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-5	-1.338e+01	0.0000	357.0	1.99%	220.7	1.55%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-5	-1.313e+01	0.0000	554.0	3.09%	361.7	2.54%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-5	-1.283e+01	0.0000	335.0	1.87%	206.8	1.45%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-5	-1.227e+01	0.0000	189.0	1.06%	107.1	0.75%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-5	-1.218e+01	0.0000	643.0	3.59%	429.2	3.01%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-5	-1.206e+01	0.0000	985.0	5.50%	682.9	4.79%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-5	-1.164e+01	0.0000	243.0	1.36%	145.2	1.02%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-4	-1.143e+01	0.0000	264.0	1.47%	160.5	1.13%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-4	-1.109e+01	0.0000	1144.0	6.39%	806.5	5.66%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-4	-1.097e+01	0.0000	271.0	1.51%	166.1	1.16%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-4	-1.089e+01	0.0000	128.0	0.71%	69.2	0.49%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-4	-1.072e+01	0.0000	586.0	3.27%	393.1	2.76%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-4	-1.064e+01	0.0001	171.0	0.95%	98.7	0.69%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-4	-1.054e+01	0.0001	4071.0	22.73%	3063.7	21.49%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-4	-1.050e+01	0.0001	275.0	1.54%	171.0	1.20%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-4	-1.042e+01	0.0001	365.0	2.04%	234.8	1.65%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-4	-1.023e+01	0.0001	2815.0	15.72%	2090.4	14.66%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-4	-9.718e+00	0.0001	3000.0	16.75%	2238.2	15.70%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-4	-9.696e+00	0.0001	125.0	0.70%	69.5	0.49%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-4	-9.640e+00	0.0001	804.0	4.49%	559.5	3.92%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-4	-9.525e+00	0.0001	639.0	3.57%	437.5	3.07%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-4	-9.371e+00	0.0002	2321.0	12.96%	1716.2	12.04%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-3	-8.940e+00	0.0003	1048.0	5.85%	746.3	5.23%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-3	-8.826e+00	0.0003	765.0	4.27%	534.7	3.75%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-3	-8.672e+00	0.0003	452.0	2.52%	304.0	2.13%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-3	-8.318e+00	0.0005	880.0	4.91%	623.7	4.37%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-3	-8.255e+00	0.0005	588.0	3.28%	405.2	2.84%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-3	-8.246e+00	0.0005	373.0	2.08%	247.8	1.74%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-3	-7.733e+00	0.0008	633.0	3.53%	441.1	3.09%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-3	-7.680e+00	0.0009	2168.0	12.11%	1613.0	11.31%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-3	-7.440e+00	0.0011	844.0	4.71%	601.8	4.22%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-3	-7.432e+00	0.0011	1954.0	10.91%	1450.2	10.17%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-3	-7.404e+00	0.0011	188.0	1.05%	117.6	0.82%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-3	-7.143e+00	0.0015	400.0	2.23%	271.6	1.90%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-6.877e+00	0.0019	159.0	0.89%	98.7	0.69%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-2	-6.768e+00	0.0021	108.0	0.60%	63.8	0.45%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-2	-6.109e+00	0.0040	78.0	0.44%	44.3	0.31%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-6.030e+00	0.0043	97.0	0.54%	57.8	0.41%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-2	-5.876e+00	0.0050	134.0	0.75%	83.4	0.59%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-5.828e+00	0.0052	1224.0	6.84%	902.3	6.33%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-2	-5.793e+00	0.0053	169.0	0.94%	109.0	0.76%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-2	-5.722e+00	0.0057	786.0	4.39%	568.1	3.98%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-2	-5.553e+00	0.0067	1334.0	7.45%	989.8	6.94%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-2	-5.471e+00	0.0072	1429.0	7.98%	1063.6	7.46%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-2	-5.318e+00	0.0083	3465.0	19.35%	2651.4	18.59%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-5.205e+00	0.0092	245.0	1.37%	165.9	1.16%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-2	-5.169e+00	0.0095	3973.0	22.19%	3052.7	21.41%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-5.120e+00	0.0099	927.0	5.18%	680.3	4.77%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-4.787e+00	0.0138	772.0	4.31%	564.7	3.96%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-2	-4.617e+00	0.0162	81.0	0.45%	49.1	0.34%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-1	-4.524e+00	0.0177	95.0	0.53%	60.0	0.42%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-4.373e+00	0.0204	820.0	4.58%	604.5	4.24%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-4.170e+00	0.0248	601.0	3.36%	438.2	3.07%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-4.126e+00	0.0258	1815.0	10.14%	1377.3	9.66%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-3.821e+00	0.0348	91.0	0.51%	58.5	0.41%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.820e+00	0.0348	2162.0	12.07%	1652.1	11.59%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-3.724e+00	0.0378	932.0	5.20%	696.5	4.88%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-3.696e+00	0.0387	565.0	3.16%	414.2	2.91%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.652e+00	0.0401	444.0	2.48%	322.2	2.26%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-1	-3.403e+00	0.0511	44.0	0.25%	26.4	0.19%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-3.161e+00	0.0648	2917.0	16.29%	2255.7	15.82%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-3.071e+00	0.0704	164.0	0.92%	114.8	0.81%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.059e+00	0.0708	5504.0	30.74%	4300.7	30.16%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-2.955e+00	0.0781	914.0	5.10%	690.8	4.84%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e-1	-2.848e+00	0.0864	176.0	0.98%	124.8	0.88%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-2.825e+00	0.0879	1645.0	9.19%	1262.3	8.85%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-2.808e+00	0.0888	300.0	1.68%	218.5	1.53%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-2.759e+00	0.0927	897.0	5.01%	679.1	4.76%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-2.617e+00	0.1063	1489.0	8.32%	1143.6	8.02%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-2.457e+00	0.1239	323.0	1.80%	238.4	1.67%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-2.374e+00	0.1340	5187.0	28.97%	4066.3	28.52%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-2.342e+00	0.1375	71.0	0.40%	48.5	0.34%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.279e+00	0.1456	2103.0	11.74%	1631.6	11.44%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.216e+00	0.1542	1148.0	6.41%	882.1	6.19%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.155e+00	0.1629	101.0	0.56%	71.2	0.50%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-2.036e+00	0.1826	583.0	3.26%	443.2	3.11%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.866e+00	0.2151	82.0	0.46%	58.0	0.41%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.812e+00	0.2257	659.0	3.68%	505.9	3.55%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.809e+00	0.2257	1530.0	8.54%	1189.6	8.34%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.528e+00	0.2966	719.0	4.02%	556.5	3.90%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.512e+00	0.2997	516.0	2.88%	397.5	2.79%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.393e+00	0.3356	682.0	3.81%	529.9	3.72%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.347e+00	0.3495	545.0	3.04%	422.4	2.96%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.268e+00	0.3743	126.0	0.70%	95.5	0.67%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.268e+00	0.3743	126.0	0.70%	95.5	0.67%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.249e+00	0.3794	1723.0	9.62%	1354.6	9.50%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.222e+00	0.3876	961.0	5.37%	752.7	5.28%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.207e+00	0.3913	119.0	0.66%	90.2	0.63%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.186e+00	0.3977	741.0	4.14%	579.4	4.06%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.118e+00	0.4233	2993.0	16.71%	2365.3	16.59%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.091e+00	0.4328	417.0	2.33%	325.8	2.28%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-9.542e-01	0.4935	10.0	0.06%	7.6	0.05%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.448e-01	0.4955	23.0	0.13%	17.3	0.12%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-9.174e-01	0.5067	83.0	0.46%	64.0	0.45%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-8.609e-01	0.5334	223.0	1.25%	175.3	1.23%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-8.549e-01	0.5338	609.0	3.40%	482.0	3.38%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-8.358e-01	0.5414	771.0	4.31%	610.1	4.28%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-7.430e-01	0.5910	372.0	2.08%	295.3	2.07%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.208e-01	0.5982	418.0	2.33%	332.9	2.33%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-7.208e-01	0.5982	418.0	2.33%	332.1	2.33%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-6.829e-01	0.6182	741.0	4.14%	590.3	4.14%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-6.786e-01	0.6182	255.0	1.42%	203.1	1.42%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-5.843e-01	0.6756	243.0	1.36%	195.5	1.37%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-5.733e-01	0.6797	5.0	0.03%	5.0	0.04%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-5.532e-01	0.6901	311.0	1.74%	250.0	1.75%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-5.290e-01	0.7036	449.0	2.51%	361.8	2.54%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.023e-01	0.7192	638.0	3.56%	513.9	3.60%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-4.782e-01	0.7331	78.0	0.44%	64.4	0.45%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-4.751e-01	0.7331	57.0	0.32%	47.4	0.33%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-4.741e-01	0.7331	833.0	4.65%	670.5	4.70%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.724e-01	0.7331	401.0	2.24%	324.9	2.28%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-4.696e-01	0.7331	462.0	2.58%	373.0	2.62%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-4.622e-01	0.7331	569.0	3.18%	459.8	3.22%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-4.315e-01	0.7467	325.0	1.81%	265.0	1.86%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.063e-01	0.7622	2620.0	14.63%	2102.5	14.74%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-3.175e-01	0.8291	368.0	2.06%	302.7	2.12%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.644e-01	0.8702	2562.0	14.31%	2067.2	14.50%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-2.499e-01	0.8789	716.0	4.00%	586.2	4.11%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.466e-01	0.8789	302.0	1.69%	251.1	1.76%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.861e-01	0.9283	30.0	0.17%	28.0	0.20%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.673e-01	0.9416	198.0	1.11%	170.0	1.19%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.406e-01	0.9628	3334.0	18.62%	2701.7	18.95%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.298e-01	0.9688	809.0	4.52%	670.9	4.71%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.166e-01	0.9774	122.0	0.68%	108.6	0.76%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.120e-01	0.9774	57.0	0.32%	54.0	0.38%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.067e-01	0.9783	168.0	0.94%	147.3	1.03%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-9.851e-02	0.9820	183.0	1.02%	160.4	1.12%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.560e-02	1.0000	185.0	1.03%	165.1	1.16%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.299e-02	1.0000	359.0	2.00%	314.5	2.21%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.266e-02	1.0000	1082.0	6.04%	909.9	6.38%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.189e-02	1.0000	426.0	2.38%	371.0	2.60%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.845e-02	1.0000	202.0	1.13%	183.4	1.29%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.480e-02	1.0000	211.0	1.18%	194.0	1.36%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.308e-03	1.0000	15.0	0.08%	21.8	0.15%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.289e-03	1.0000	23.0	0.13%	31.2	0.22%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.170e-03	1.0000	836.0	4.67%	736.5	5.17%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-8.570e-04	1.0000	819.0	4.57%	724.8	5.08%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-4.160e-04	1.0000	654.0	3.65%	590.1	4.14%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.890e-04	1.0000	36.0	0.20%	48.2	0.34%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.300e-05	1.0000	165.0	0.92%	174.5	1.22%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.400e-05	1.0000	1121.0	6.26%	1001.9	7.03%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.600e-05	1.0000	232.0	1.30%	239.7	1.68%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.000e-06	1.0000	591.0	3.30%	564.9	3.96%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.000e-06	1.0000	1173.0	6.55%	1064.2	7.46%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	7055.0	39.40%	5910.2	41.45%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-0.000e+00	1.0000	3667.0	20.48%	3166.0	22.20%