Information for motif30


Reverse Opposite:

p-value:1e-14
log p-value:-3.312e+01
Information Content per bp:1.677
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets106.3 +/- 48.2bp
Average Position of motif in Background149.4 +/- 2.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:CGCCGGTCAT-
-----GTCATN

PH0141.1_Pknox2/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CGCCGGTCAT---
AAGCACCTGTCAATAT

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CGCCGGTCAT
---AGGTCA-

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CGCCGGTCAT---
CGCGCCGGGTCACGTA

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CGCCGGTCAT
AGCGCGCC------

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------CGCCGGTCAT
TACGCCCCGCCACTCTG

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CGCCGGTCAT---
-GSCTGTCACTCA

PH0105.1_Meis3/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CGCCGGTCAT---
AATTACCTGTCAATAC

MA0067.1_Pax2/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CGCCGGTCAT--
----AGTCACGC

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CGCCGGTCAT
TCACCTCTGGGCAG