Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 13879)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 10714)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-702	-1.619e+03	0.0000	1399.0	10.08%	150.0	1.40%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-550	-1.268e+03	0.0000	1506.0	10.85%	235.9	2.20%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-406	-9.362e+02	0.0000	2653.0	19.11%	826.5	7.70%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-360	-8.301e+02	0.0000	2232.0	16.08%	668.4	6.22%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-298	-6.875e+02	0.0000	1988.0	14.32%	616.1	5.74%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-218	-5.037e+02	0.0000	2390.0	17.22%	939.9	8.75%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-143	-3.298e+02	0.0000	970.0	6.99%	297.8	2.77%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-138	-3.179e+02	0.0000	3142.0	22.63%	1571.3	14.63%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-118	-2.718e+02	0.0000	3439.0	24.77%	1826.8	17.01%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-111	-2.576e+02	0.0000	1722.0	12.40%	755.6	7.04%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-111	-2.568e+02	0.0000	1680.0	12.10%	731.1	6.81%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-109	-2.518e+02	0.0000	2697.0	19.43%	1366.8	12.73%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-107	-2.473e+02	0.0000	1206.0	8.69%	469.7	4.37%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-107	-2.472e+02	0.0000	1271.0	9.16%	505.0	4.70%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-103	-2.372e+02	0.0000	1099.0	7.92%	418.5	3.90%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-95	-2.210e+02	0.0000	1620.0	11.67%	730.1	6.80%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-92	-2.129e+02	0.0000	2220.0	15.99%	1110.5	10.34%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-62	-1.428e+02	0.0000	270.0	1.94%	62.2	0.58%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-55	-1.272e+02	0.0000	288.0	2.07%	75.2	0.70%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-51	-1.177e+02	0.0000	85.0	0.61%	7.3	0.07%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-49	-1.136e+02	0.0000	1420.0	10.23%	734.8	6.84%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-41	-9.669e+01	0.0000	759.0	5.47%	346.0	3.22%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-41	-9.511e+01	0.0000	3075.0	22.15%	1894.6	17.64%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-40	-9.300e+01	0.0000	2076.0	14.95%	1205.0	11.22%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-34	-8.027e+01	0.0000	1354.0	9.75%	744.4	6.93%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-34	-7.936e+01	0.0000	290.0	2.09%	99.7	0.93%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-33	-7.821e+01	0.0000	599.0	4.31%	271.5	2.53%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-31	-7.148e+01	0.0000	439.0	3.16%	185.8	1.73%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-30	-7.083e+01	0.0000	2493.0	17.96%	1545.0	14.39%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-30	-6.990e+01	0.0000	447.0	3.22%	191.7	1.79%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-27	-6.287e+01	0.0000	1530.0	11.02%	896.5	8.35%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-27	-6.246e+01	0.0000	2938.0	21.16%	1886.3	17.56%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-26	-6.107e+01	0.0000	1458.0	10.50%	851.5	7.93%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-23	-5.440e+01	0.0000	5018.0	36.15%	3447.5	32.10%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-22	-5.089e+01	0.0000	291.0	2.10%	120.4	1.12%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-21	-5.044e+01	0.0000	517.0	3.72%	254.6	2.37%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-21	-4.946e+01	0.0000	792.0	5.71%	430.2	4.01%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-21	-4.850e+01	0.0000	416.0	3.00%	195.1	1.82%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-20	-4.750e+01	0.0000	2784.0	20.05%	1824.8	16.99%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-20	-4.725e+01	0.0000	2596.0	18.70%	1689.4	15.73%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-19	-4.495e+01	0.0000	169.0	1.22%	59.6	0.56%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-19	-4.470e+01	0.0000	72.0	0.52%	15.3	0.14%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-18	-4.290e+01	0.0000	5343.0	38.49%	3743.9	34.86%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-18	-4.287e+01	0.0000	786.0	5.66%	438.6	4.08%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-18	-4.158e+01	0.0000	1582.0	11.40%	985.4	9.18%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-17	-4.122e+01	0.0000	882.0	6.35%	505.4	4.71%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-17	-4.110e+01	0.0000	572.0	4.12%	302.7	2.82%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-17	-4.095e+01	0.0000	7410.0	53.38%	5336.7	49.69%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-17	-3.920e+01	0.0000	2647.0	19.07%	1755.2	16.34%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-16	-3.883e+01	0.0000	182.0	1.31%	70.9	0.66%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-16	-3.766e+01	0.0000	485.0	3.49%	252.8	2.35%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-15	-3.627e+01	0.0000	415.0	2.99%	210.4	1.96%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-15	-3.601e+01	0.0000	1718.0	12.38%	1098.8	10.23%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-15	-3.576e+01	0.0000	1902.0	13.70%	1230.5	11.46%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-15	-3.515e+01	0.0000	251.0	1.81%	112.1	1.04%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-15	-3.498e+01	0.0000	288.0	2.07%	134.4	1.25%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-15	-3.483e+01	0.0000	189.0	1.36%	77.4	0.72%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-14	-3.414e+01	0.0000	1310.0	9.44%	816.0	7.60%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-14	-3.405e+01	0.0000	2975.0	21.43%	2016.2	18.77%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-14	-3.393e+01	0.0000	5516.0	39.73%	3920.6	36.50%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-14	-3.343e+01	0.0000	729.0	5.25%	419.5	3.91%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-14	-3.284e+01	0.0000	2523.0	18.17%	1690.5	15.74%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-13	-3.178e+01	0.0000	2926.0	21.08%	1990.2	18.53%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-13	-3.172e+01	0.0000	308.0	2.22%	150.7	1.40%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-13	-3.112e+01	0.0000	501.0	3.61%	273.9	2.55%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-12	-2.977e+01	0.0000	785.0	5.65%	465.0	4.33%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-12	-2.962e+01	0.0000	808.0	5.82%	481.2	4.48%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-12	-2.768e+01	0.0000	2153.0	15.51%	1442.5	13.43%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-11	-2.672e+01	0.0000	359.0	2.59%	189.4	1.76%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-11	-2.656e+01	0.0000	4447.0	32.03%	3152.9	29.36%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-11	-2.637e+01	0.0000	394.0	2.84%	212.9	1.98%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-11	-2.562e+01	0.0000	203.0	1.46%	94.9	0.88%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-10	-2.360e+01	0.0000	141.0	1.02%	60.1	0.56%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-10	-2.335e+01	0.0000	1426.0	10.27%	934.7	8.70%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-10	-2.334e+01	0.0000	780.0	5.62%	478.7	4.46%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-10	-2.324e+01	0.0000	572.0	4.12%	337.0	3.14%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-9	-2.149e+01	0.0000	1567.0	11.29%	1043.3	9.71%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-8	-2.050e+01	0.0000	1806.0	13.01%	1221.1	11.37%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-8	-2.003e+01	0.0000	1015.0	7.31%	653.3	6.08%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-8	-1.961e+01	0.0000	1020.0	7.35%	658.2	6.13%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-8	-1.934e+01	0.0000	3163.0	22.78%	2231.0	20.77%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-8	-1.903e+01	0.0000	856.0	6.17%	544.4	5.07%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-7	-1.842e+01	0.0000	792.0	5.71%	501.6	4.67%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-7	-1.840e+01	0.0000	3075.0	22.15%	2171.2	20.22%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-7	-1.832e+01	0.0000	88.0	0.63%	35.8	0.33%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-7	-1.717e+01	0.0000	725.0	5.22%	458.8	4.27%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-7	-1.707e+01	0.0000	472.0	3.40%	283.6	2.64%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-7	-1.701e+01	0.0000	2079.0	14.98%	1439.6	13.40%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-7	-1.659e+01	0.0000	2042.0	14.71%	1414.4	13.17%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-6	-1.606e+01	0.0000	1844.0	13.28%	1271.2	11.84%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-6	-1.559e+01	0.0000	1240.0	8.93%	832.6	7.75%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-6	-1.543e+01	0.0000	1608.0	11.58%	1101.2	10.25%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-6	-1.543e+01	0.0000	697.0	5.02%	444.5	4.14%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-6	-1.513e+01	0.0000	65.0	0.47%	25.0	0.23%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-6	-1.508e+01	0.0000	518.0	3.73%	320.8	2.99%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-6	-1.494e+01	0.0000	339.0	2.44%	198.6	1.85%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-6	-1.446e+01	0.0000	2358.0	16.99%	1661.4	15.47%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-6	-1.440e+01	0.0000	1799.0	12.96%	1247.3	11.61%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-5	-1.371e+01	0.0000	773.0	5.57%	504.7	4.70%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-5	-1.368e+01	0.0000	1025.0	7.38%	685.3	6.38%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-5	-1.345e+01	0.0000	375.0	2.70%	227.0	2.11%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-5	-1.336e+01	0.0000	94.0	0.68%	43.4	0.40%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-5	-1.328e+01	0.0000	4029.0	29.02%	2927.7	27.26%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-5	-1.327e+01	0.0000	2134.0	15.37%	1502.6	13.99%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-5	-1.317e+01	0.0000	138.0	0.99%	70.0	0.65%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-5	-1.271e+01	0.0000	315.0	2.27%	187.9	1.75%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-5	-1.198e+01	0.0000	4410.0	31.77%	3228.7	30.06%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-5	-1.177e+01	0.0000	230.0	1.66%	132.2	1.23%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-4	-1.094e+01	0.0000	153.0	1.10%	83.0	0.77%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-4	-1.078e+01	0.0000	55.0	0.40%	23.3	0.22%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-4	-1.069e+01	0.0001	1861.0	13.41%	1316.7	12.26%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-4	-1.058e+01	0.0001	648.0	4.67%	427.5	3.98%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-4	-1.007e+01	0.0001	960.0	6.92%	656.0	6.11%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-4	-9.960e+00	0.0001	89.0	0.64%	44.5	0.41%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-4	-9.824e+00	0.0001	1418.0	10.21%	993.6	9.25%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-4	-9.808e+00	0.0001	1858.0	13.38%	1320.9	12.30%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-4	-9.483e+00	0.0002	912.0	6.57%	623.3	5.80%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-4	-9.338e+00	0.0002	276.0	1.99%	169.3	1.58%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-4	-9.337e+00	0.0002	68.0	0.49%	32.1	0.30%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-3	-9.089e+00	0.0002	1077.0	7.76%	746.6	6.95%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-3	-9.022e+00	0.0002	858.0	6.18%	586.2	5.46%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-8.916e+00	0.0003	953.0	6.87%	656.0	6.11%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-3	-8.549e+00	0.0004	24.0	0.17%	8.6	0.08%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-3	-8.526e+00	0.0004	702.0	5.06%	475.9	4.43%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-3	-8.426e+00	0.0004	1001.0	7.21%	694.5	6.47%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-3	-8.181e+00	0.0005	69.0	0.50%	34.2	0.32%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-3	-8.166e+00	0.0006	2334.0	16.81%	1690.3	15.74%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-3	-8.122e+00	0.0006	680.0	4.90%	461.2	4.29%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-3	-8.021e+00	0.0006	1438.0	10.36%	1020.5	9.50%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-3	-7.956e+00	0.0007	62.0	0.45%	31.0	0.29%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-3	-7.886e+00	0.0007	70.0	0.50%	35.9	0.33%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-3	-7.730e+00	0.0008	84.0	0.61%	44.5	0.41%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-3	-7.632e+00	0.0009	689.0	4.96%	470.0	4.38%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-3	-7.575e+00	0.0009	1349.0	9.72%	957.2	8.91%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-3	-7.435e+00	0.0011	268.0	1.93%	169.0	1.57%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-3	-7.171e+00	0.0014	3301.0	23.78%	2432.1	22.64%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-2	-6.823e+00	0.0020	378.0	2.72%	250.0	2.33%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-2	-6.569e+00	0.0025	2118.0	15.26%	1542.4	14.36%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-6.263e+00	0.0034	404.0	2.91%	270.3	2.52%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-6.121e+00	0.0039	259.0	1.87%	167.8	1.56%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-2	-6.080e+00	0.0040	3048.0	21.96%	2253.0	20.98%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-2	-5.926e+00	0.0046	593.0	4.27%	409.4	3.81%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-2	-5.722e+00	0.0056	684.0	4.93%	477.2	4.44%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-2	-5.691e+00	0.0058	183.0	1.32%	115.4	1.07%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-2	-5.654e+00	0.0059	580.0	4.18%	401.1	3.73%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-2	-5.196e+00	0.0093	485.0	3.49%	334.2	3.11%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-2	-5.187e+00	0.0094	264.0	1.90%	174.2	1.62%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-2	-5.152e+00	0.0096	542.0	3.90%	376.3	3.50%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-2	-5.075e+00	0.0103	77.0	0.55%	44.1	0.41%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-4.926e+00	0.0119	141.0	1.02%	88.4	0.82%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-4.857e+00	0.0127	192.0	1.38%	124.0	1.15%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-2	-4.823e+00	0.0130	433.0	3.12%	298.2	2.78%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-2	-4.754e+00	0.0139	335.0	2.41%	227.8	2.12%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-4.564e+00	0.0166	5.0	0.04%	0.5	0.00%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-4.526e+00	0.0172	488.0	3.52%	340.8	3.17%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-4.526e+00	0.0172	339.0	2.44%	231.4	2.15%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-4.423e+00	0.0188	2061.0	14.85%	1522.8	14.18%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-4.249e+00	0.0222	430.0	3.10%	299.6	2.79%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-4.199e+00	0.0232	1178.0	8.49%	857.8	7.99%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-3.969e+00	0.0290	134.0	0.97%	87.0	0.81%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.792e+00	0.0344	37.0	0.27%	20.5	0.19%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-1	-3.785e+00	0.0345	479.0	3.45%	338.4	3.15%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-3.782e+00	0.0345	611.0	4.40%	436.2	4.06%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.766e+00	0.0347	1767.0	12.73%	1307.6	12.17%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-3.748e+00	0.0351	243.0	1.75%	165.7	1.54%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.618e+00	0.0398	1084.0	7.81%	792.3	7.38%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-3.523e+00	0.0435	382.0	2.75%	268.3	2.50%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.426e+00	0.0476	245.0	1.76%	168.8	1.57%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.957e+00	0.0757	373.0	2.69%	265.5	2.47%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-2.693e+00	0.0979	122.0	0.88%	82.4	0.77%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.612e+00	0.1056	582.0	4.19%	424.1	3.95%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.472e+00	0.1207	555.0	4.00%	405.0	3.77%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-2.441e+00	0.1238	239.0	1.72%	169.5	1.58%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-2.372e+00	0.1319	168.0	1.21%	117.5	1.09%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.348e+00	0.1343	487.0	3.51%	355.9	3.31%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.155e+00	0.1620	161.0	1.16%	113.5	1.06%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.003e+00	0.1875	562.0	4.05%	415.3	3.87%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.974e+00	0.1920	303.0	2.18%	220.7	2.06%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.867e+00	0.2126	187.0	1.35%	135.0	1.26%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.811e+00	0.2234	880.0	6.34%	659.6	6.14%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.796e+00	0.2255	177.0	1.28%	127.6	1.19%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.725e+00	0.2409	422.0	3.04%	312.4	2.91%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.688e+00	0.2485	117.0	0.84%	83.3	0.78%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.569e+00	0.2783	554.0	3.99%	414.9	3.86%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.554e+00	0.2810	1280.0	9.22%	969.7	9.03%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.521e+00	0.2890	2920.0	21.03%	2230.1	20.76%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-1.471e+00	0.3022	174.0	1.25%	127.9	1.19%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.403e+00	0.3218	84.0	0.61%	60.8	0.57%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.361e+00	0.3339	153.0	1.10%	112.4	1.05%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-1.285e+00	0.3582	55.0	0.40%	39.3	0.37%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.222e+00	0.3793	2404.0	17.32%	1841.5	17.15%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.200e+00	0.3858	37.0	0.27%	26.5	0.25%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.099e+00	0.4248	23.0	0.17%	16.7	0.16%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.061e+00	0.4387	478.0	3.44%	363.8	3.39%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.045e+00	0.4435	449.0	3.23%	341.2	3.18%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-1.022e+00	0.4518	48.0	0.35%	35.9	0.33%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-9.626e-01	0.4769	1263.0	9.10%	969.3	9.02%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-9.572e-01	0.4770	91.0	0.66%	68.5	0.64%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-9.081e-01	0.4985	2036.0	14.67%	1567.8	14.60%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-8.792e-01	0.5106	102.0	0.73%	77.5	0.72%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-6.992e-01	0.6082	524.0	3.77%	405.8	3.78%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.963e-01	0.6082	2459.0	17.71%	1902.8	17.72%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.761e-01	0.6163	628.0	4.52%	486.9	4.53%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.145e-01	0.6523	1434.0	10.33%	1112.4	10.36%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-6.035e-01	0.6563	172.0	1.24%	134.0	1.25%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-5.966e-01	0.6576	9.0	0.06%	7.4	0.07%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-5.965e-01	0.6576	726.0	5.23%	564.8	5.26%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.797e-01	0.6624	1742.0	12.55%	1352.2	12.59%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-5.796e-01	0.6624	2647.0	19.07%	2053.4	19.12%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-5.711e-01	0.6624	863.0	6.22%	671.4	6.25%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-5.295e-01	0.6866	5.0	0.04%	4.2	0.04%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-5.159e-01	0.6927	30.0	0.22%	24.9	0.23%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-5.144e-01	0.6927	553.0	3.98%	432.9	4.03%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-5.045e-01	0.6941	707.0	5.09%	552.1	5.14%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.235e-01	0.7457	101.0	0.73%	81.9	0.76%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.235e-01	0.7457	101.0	0.73%	81.9	0.76%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-4.109e-01	0.7516	2815.0	20.28%	2193.5	20.42%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-3.681e-01	0.7810	270.0	1.94%	215.9	2.01%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.293e-01	0.8081	256.0	1.84%	206.0	1.92%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.838e-01	0.8419	24.0	0.17%	22.0	0.20%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.677e-01	0.8517	99.0	0.71%	82.6	0.77%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.447e-01	0.8676	335.0	2.41%	270.1	2.51%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-2.337e-01	0.8732	148.0	1.07%	122.7	1.14%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.331e-01	0.8732	246.0	1.77%	200.6	1.87%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.849e-01	0.9088	717.0	5.16%	575.0	5.35%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.767e-01	0.9122	569.0	4.10%	458.2	4.27%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.702e-01	0.9141	163.0	1.17%	136.4	1.27%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.686e-01	0.9141	57.0	0.41%	50.1	0.47%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.608e-01	0.9147	275.0	1.98%	226.0	2.10%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.296e-01	0.9396	609.0	4.39%	493.4	4.59%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.039e-01	0.9598	601.0	4.33%	489.4	4.56%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-7.634e-02	0.9824	87.0	0.63%	78.8	0.73%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-7.499e-02	0.9824	324.0	2.33%	271.0	2.52%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.101e-02	0.9990	333.0	2.40%	281.3	2.62%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.569e-02	1.0000	43.0	0.31%	43.1	0.40%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-3.370e-02	1.0000	513.0	3.70%	429.9	4.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.231e-02	1.0000	130.0	0.94%	119.4	1.11%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.460e-02	1.0000	5618.0	40.47%	4444.5	41.38%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.155e-02	1.0000	745.0	5.37%	624.3	5.81%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.084e-02	1.0000	53.0	0.38%	55.1	0.51%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.235e-03	1.0000	250.0	1.80%	225.1	2.10%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-6.125e-03	1.0000	189.0	1.36%	175.0	1.63%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.120e-04	1.0000	133.0	0.96%	134.5	1.25%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.530e-04	1.0000	763.0	5.50%	668.2	6.22%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.250e-04	1.0000	129.0	0.93%	135.7	1.26%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.210e-04	1.0000	434.0	3.13%	397.8	3.70%