Information for motif1


Reverse Opposite:

p-value:1e-743
log p-value:-1.712e+03
Information Content per bp:1.594
Number of Target Sequences with motif4319.0
Percentage of Target Sequences with motif18.78%
Number of Background Sequences with motif1886.8
Percentage of Background Sequences with motif7.06%
Average Position of motif in Targets99.2 +/- 53.5bp
Average Position of motif in Background100.9 +/- 60.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:TGTTTACWYA
TGTTTACTTT

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:TGTTTACWYA
TGTTTACTTT

MA0148.3_FOXA1/Jaspar

Match Rank:3
Score:0.93
Offset:-4
Orientation:forward strand
Alignment:----TGTTTACWYA-
TCCATGTTTACTTTG

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--TGTTTACWYA-----
NSTGTTTRCWCAGBNNN

MA0047.2_Foxa2/Jaspar

Match Rank:5
Score:0.92
Offset:0
Orientation:forward strand
Alignment:TGTTTACWYA--
TGTTTACTTAGG

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:6
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--TGTTTACWYA
CNTGTTTACATA

MF0005.1_Forkhead_class/Jaspar

Match Rank:7
Score:0.91
Offset:0
Orientation:forward strand
Alignment:TGTTTACWYA
TGTTTATTT-

MA0593.1_FOXP2/Jaspar

Match Rank:8
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--TGTTTACWYA
TNTGTTTACTT-

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:9
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---TGTTTACWYA
NYYTGTTTACHN-

PB0015.1_Foxa2_1/Jaspar

Match Rank:10
Score:0.88
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTTACWYA--
NNNTTTGTTTACTTTTN