Information for motif10


Reverse Opposite:

p-value:1e-74
log p-value:-1.720e+02
Information Content per bp:1.637
Number of Target Sequences with motif752.0
Percentage of Target Sequences with motif3.27%
Number of Background Sequences with motif415.8
Percentage of Background Sequences with motif1.56%
Average Position of motif in Targets98.7 +/- 55.9bp
Average Position of motif in Background95.6 +/- 55.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0509.1_Rfx1/Jaspar

Match Rank:1
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----CCATGGCAAC
GTTGCCATGGCAAC

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--CCATGGCAAC---
TACCATAGCAACGGT

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.87
Offset:0
Orientation:forward strand
Alignment:CCATGGCAAC--
SCCTAGCAACAG

MA0600.1_RFX2/Jaspar

Match Rank:4
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----CCATGGCAAC-----
GTTGCCATGGCAACCGCGG

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.84
Offset:-6
Orientation:forward strand
Alignment:------CCATGGCAAC-------
TGTGACCCTTAGCAACCGATTAA

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---CCATGGCAAC-
TTGCCATGGCAACC

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---CCATGGCAAC-
TTGCCATGGCAACN

MA0510.1_RFX5/Jaspar

Match Rank:8
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--CCATGGCAAC---
CTCCCTGGCAACAGC

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:9
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--CCATGGCAAC---
CCGCATAGCAACGGA

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----CCATGGCAAC
KGTTGCCATGGCAAC