Information for motif11


Reverse Opposite:

p-value:1e-70
log p-value:-1.614e+02
Information Content per bp:1.857
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif0.27%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets92.2 +/- 52.4bp
Average Position of motif in Background90.4 +/- 67.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--TGTCACTCAAGA
NCTGTCAATCAN--

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TGTCACTCAAGA
GSCTGTCACTCA---

MA0498.1_Meis1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TGTCACTCAAGA
AGCTGTCACTCACCT

MA0067.1_Pax2/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGTCACTCAAGA
AGTCACGC----

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGTCACTCAAGA
AGCCACTCAAG-

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:6
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TGTCACTCAAGA--
----ATGCCAGACN

Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGTCACTCAAGA
CNGTCACGCCAC-

Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGTCACTCAAGA
-ATCACCCCAT-

MA0596.1_SREBF2/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TGTCACTCAAGA
-ATCACCCCAT-

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TGTCACTCAAGA
-RSCACTYRAG-