Information for motif17


Reverse Opposite:

p-value:1e-46
log p-value:-1.065e+02
Information Content per bp:1.495
Number of Target Sequences with motif160.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif46.8
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets104.1 +/- 52.2bp
Average Position of motif in Background104.3 +/- 71.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:TTAATGATTAAC-
TTAATGTTTAACC

MA0153.1_HNF1B/Jaspar

Match Rank:2
Score:0.91
Offset:0
Orientation:forward strand
Alignment:TTAATGATTAAC
TTAATATTTAAC

MA0046.1_HNF1A/Jaspar

Match Rank:3
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-TTAATGATTAAC-
GNTAATNATTAACC

PH0051.1_Hoxa4/Jaspar

Match Rank:4
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TTAATGATTAAC---
GATTATTAATTAACTTG

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TTAATGATTAAC
--AATAATT---

PH0018.1_Dbx1/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TTAATGATTAAC--
TNATTATTAATTAATTA

PH0070.1_Hoxc5/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTAATGATTAAC---
NNTNATTAATTAATTCG

PH0059.1_Hoxb4/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTAATGATTAAC---
GNTNATTAATTAACNNG

Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTAATGATTAAC
TAATTGATTA--

PH0176.1_Vsx1/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTAATGATTAAC---
ANTNATTAATTAACTNG