Information for motif18


Reverse Opposite:

p-value:1e-41
log p-value:-9.555e+01
Information Content per bp:1.697
Number of Target Sequences with motif495.0
Percentage of Target Sequences with motif2.15%
Number of Background Sequences with motif293.3
Percentage of Background Sequences with motif1.10%
Average Position of motif in Targets101.5 +/- 55.3bp
Average Position of motif in Background94.0 +/- 55.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0093.2_USF1/Jaspar

Match Rank:1
Score:0.97
Offset:1
Orientation:reverse strand
Alignment:BGGTCACGTGRC
-GGTCACGTGGC

E-box(HLH)/Promoter/Homer

Match Rank:2
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-BGGTCACGTGRC
CCGGTCACGTGA-

MA0526.1_USF2/Jaspar

Match Rank:3
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:BGGTCACGTGRC
-GGTCACATGAC

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.91
Offset:1
Orientation:forward strand
Alignment:BGGTCACGTGRC
-GGTCACGTGA-

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:5
Score:0.91
Offset:2
Orientation:forward strand
Alignment:BGGTCACGTGRC
--GTCACGTGGT

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:BGGTCACGTGRC
--GTCACGTGGM

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:7
Score:0.86
Offset:-4
Orientation:reverse strand
Alignment:----BGGTCACGTGRC------
NTNNTNGTCACGTGACNNNTNC

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.85
Offset:2
Orientation:forward strand
Alignment:BGGTCACGTGRC
--GHCACGTG--

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.84
Offset:2
Orientation:forward strand
Alignment:BGGTCACGTGRC
--GNCACGTG--

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:BGGTCACGTGRC
-NGKCACGTGM-