Information for motif20


Reverse Opposite:

p-value:1e-36
log p-value:-8.402e+01
Information Content per bp:1.530
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets102.7 +/- 58.4bp
Average Position of motif in Background90.4 +/- 20.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0507.1_POU2F2/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AACATTTGCA---
TTCATTTGCATAT

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.74
Offset:3
Orientation:forward strand
Alignment:AACATTTGCA---
---ATTTGCATAA

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:AACATTTGCA---
---ATTTGCATAT

PH0145.1_Pou2f3/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AACATTTGCA-----
TNTAATTTGCATACNA

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AACATTTGCA-----
TNTAATTTGCATANNN

PB0146.1_Mafk_2/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AACATTTGCA---
GAAAAAATTGCAAGG

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----AACATTTGCA---
CCNNACCATCTGGCCTN

OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AACATTTGCA--------
---ATTTGCATAACAATG

PB0047.1_Myf6_1/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AACATTTGCA--
GAAGAACAGGTGTCCG

PB0066.1_Sox17_1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AACATTTGCA--
ATAAACAATTAAACA