Information for motif24


Reverse Opposite:

p-value:1e-20
log p-value:-4.760e+01
Information Content per bp:1.974
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets98.7 +/- 34.1bp
Average Position of motif in Background117.5 +/- 51.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0124.1_NKX3-1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TTAAGTTTGA
-TAAGTAT--

MA0164.1_Nr2e3/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TTAAGTTTGA
--AAGCTTG-

MA0063.1_Nkx2-5/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTAAGTTTGA
TTAATTG---

bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TTAAGTTTGA----
NAGTTTCABTHTGACTNW

PB0176.1_Sox5_2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTAAGTTTGA--
NNCTNAATTATGANN

MA0009.1_T/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TTAAGTTTGA-
CTAGGTGTGAA

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TTAAGTTTGA--
--AGGTGTGAAM

CHR/Cell-Cycle-Exp/Homer

Match Rank:8
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:TTAAGTTTGA-----
-----TTTGAAACCG

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGTTTGA---
NTNNTTAAGTGGNTNAN

PH0134.1_Pbx1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TTAAGTTTGA-------
NNNNNATTGATGNGTGN