Information for motif27


Reverse Opposite:

p-value:1e-14
log p-value:-3.226e+01
Information Content per bp:1.530
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets90.6 +/- 41.0bp
Average Position of motif in Background65.6 +/- 12.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0133.1_BRCA1/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:ACACAACACC
--ACAACAC-

PB0120.1_Foxj1_2/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---ACACAACACC--
ATGTCACAACAACAC

PB0117.1_Eomes_2/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-ACACAACACC-----
NNGGCGACACCTCNNN

PB0122.1_Foxk1_2/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACACAACACC-
CAAACAACAACACCT

PB0121.1_Foxj3_2/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ACACAACACC---
AACACCAAAACAAAGGA

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------ACACAACACC
CGAAGCACACAAAATA

PB0168.1_Sox14_2/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---ACACAACACC--
CTCACACAATGGCGC

PH0164.1_Six4/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ACACAACACC-----
ATAAATGACACCTATCA

MA0493.1_Klf1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ACACAACACC--
-GGCCACACCCA

PB0123.1_Foxl1_2/Jaspar

Match Rank:10
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------ACACAACACC
ATATCAAAACAAAACA