Information for motif3


Reverse Opposite:

p-value:1e-412
log p-value:-9.502e+02
Information Content per bp:1.739
Number of Target Sequences with motif2654.0
Percentage of Target Sequences with motif11.54%
Number of Background Sequences with motif1199.5
Percentage of Background Sequences with motif4.49%
Average Position of motif in Targets102.2 +/- 54.0bp
Average Position of motif in Background83.6 +/- 59.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:CTGATTGGCT
CCGATTGGCT

MA0502.1_NFYB/Jaspar

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:CTGATTGGCT-----
CTGATTGGTCNATTT

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:CTGATTGGCT---
-TGATTGGCTANN

MA0060.2_NFYA/Jaspar

Match Rank:4
Score:0.87
Offset:-6
Orientation:forward strand
Alignment:------CTGATTGGCT--
AGAGTGCTGATTGGTCCA

PH0005.1_Barhl1/Jaspar

Match Rank:5
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---CTGATTGGCT---
GNNTTAATTGGTTGTT

MA0161.1_NFIC/Jaspar

Match Rank:6
Score:0.76
Offset:4
Orientation:forward strand
Alignment:CTGATTGGCT
----TTGGCA

PH0089.1_Isx/Jaspar

Match Rank:7
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----CTGATTGGCT--
ACTCCTAATTAGTCGT

MA0125.1_Nobox/Jaspar

Match Rank:8
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CTGATTGGCT
-TAATTGGT-

PH0107.1_Msx2/Jaspar

Match Rank:9
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----CTGATTGGCT---
ANCGCTAATTGGTCTNN

PH0026.1_Duxbl/Jaspar

Match Rank:10
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----CTGATTGGCT--
NNNNGTTGATTGGGTCG