Information for motif5


Reverse Opposite:

p-value:1e-116
log p-value:-2.689e+02
Information Content per bp:1.629
Number of Target Sequences with motif4785.0
Percentage of Target Sequences with motif20.80%
Number of Background Sequences with motif4038.6
Percentage of Background Sequences with motif15.12%
Average Position of motif in Targets101.2 +/- 55.5bp
Average Position of motif in Background100.3 +/- 60.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:VGATTAGM
GGATTAGC

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:2
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--VGATTAGM
NBWGATAAGR

PB0023.1_Gata6_1/Jaspar

Match Rank:3
Score:0.82
Offset:-5
Orientation:forward strand
Alignment:-----VGATTAGM----
TATAGAGATAAGAATTG

PB0185.1_Tcf1_2/Jaspar

Match Rank:4
Score:0.81
Offset:-6
Orientation:forward strand
Alignment:------VGATTAGM
TTGCCCGGATTAGG

MA0467.1_Crx/Jaspar

Match Rank:5
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----VGATTAGM
AAGAGGATTAG-

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:6
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-VGATTAGM-
NAGATAAGNN

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.79
Offset:0
Orientation:forward strand
Alignment:VGATTAGM
AGATAASR

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:8
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-VGATTAGM-
CAGATAAGGN

MA0037.2_GATA3/Jaspar

Match Rank:9
Score:0.78
Offset:0
Orientation:forward strand
Alignment:VGATTAGM
AGATAAGA

MA0482.1_Gata4/Jaspar

Match Rank:10
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---VGATTAGM
NNGAGATAAGA