Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 22997)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 26724)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-667	-1.536e+03	0.0000	3537.0	15.38%	1443.1	5.40%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-648	-1.494e+03	0.0000	2980.0	12.96%	1095.3	4.10%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-560	-1.290e+03	0.0000	2715.0	11.80%	1031.9	3.86%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-394	-9.094e+02	0.0000	3151.0	13.70%	1603.7	6.00%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-354	-8.155e+02	0.0000	3316.0	14.42%	1819.0	6.81%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-344	-7.941e+02	0.0000	3630.0	15.78%	2099.1	7.86%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-287	-6.626e+02	0.0000	1476.0	6.42%	573.0	2.14%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-277	-6.392e+02	0.0000	7367.0	32.03%	5839.6	21.86%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-146	-3.379e+02	0.0000	4547.0	19.77%	3633.9	13.60%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-142	-3.274e+02	0.0000	2253.0	9.80%	1486.3	5.56%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-135	-3.109e+02	0.0000	3035.0	13.20%	2226.7	8.33%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-114	-2.648e+02	0.0000	3002.0	13.05%	2283.2	8.55%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-113	-2.622e+02	0.0000	2984.0	12.97%	2271.8	8.50%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-113	-2.616e+02	0.0000	2768.0	12.03%	2067.6	7.74%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-109	-2.518e+02	0.0000	1879.0	8.17%	1267.4	4.74%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-103	-2.373e+02	0.0000	3847.0	16.73%	3172.9	11.88%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-100	-2.316e+02	0.0000	599.0	2.60%	253.6	0.95%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-95	-2.205e+02	0.0000	2106.0	9.16%	1525.2	5.71%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-93	-2.154e+02	0.0000	609.0	2.65%	271.3	1.02%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-89	-2.052e+02	0.0000	7059.0	30.69%	6635.1	24.84%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-87	-2.014e+02	0.0000	4113.0	17.88%	3537.4	13.24%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-87	-2.013e+02	0.0000	1934.0	8.41%	1401.5	5.25%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-85	-1.973e+02	0.0000	3333.0	14.49%	2760.1	10.33%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-83	-1.929e+02	0.0000	716.0	3.11%	367.7	1.38%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-83	-1.928e+02	0.0000	1876.0	8.16%	1363.9	5.10%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-83	-1.917e+02	0.0000	1357.0	5.90%	897.1	3.36%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-78	-1.798e+02	0.0000	1274.0	5.54%	842.6	3.15%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-77	-1.795e+02	0.0000	2059.0	8.95%	1560.4	5.84%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-77	-1.783e+02	0.0000	3218.0	13.99%	2695.4	10.09%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-77	-1.775e+02	0.0000	2600.0	11.30%	2085.1	7.80%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-74	-1.711e+02	0.0000	1970.0	8.56%	1493.7	5.59%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-71	-1.644e+02	0.0000	1226.0	5.33%	823.3	3.08%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-69	-1.607e+02	0.0000	1023.0	4.45%	652.5	2.44%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-69	-1.594e+02	0.0000	513.0	2.23%	245.4	0.92%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-68	-1.576e+02	0.0000	754.0	3.28%	432.7	1.62%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-68	-1.574e+02	0.0000	1309.0	5.69%	908.9	3.40%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-67	-1.560e+02	0.0000	4426.0	19.24%	4004.7	14.99%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-66	-1.539e+02	0.0000	402.0	1.75%	171.3	0.64%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-64	-1.476e+02	0.0000	3346.0	14.55%	2913.7	10.91%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-63	-1.472e+02	0.0000	8061.0	35.05%	7976.3	29.86%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-63	-1.471e+02	0.0000	510.0	2.22%	253.7	0.95%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-58	-1.347e+02	0.0000	4407.0	19.16%	4062.0	15.20%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-57	-1.328e+02	0.0000	1023.0	4.45%	693.1	2.59%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-56	-1.293e+02	0.0000	811.0	3.53%	514.3	1.93%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-54	-1.261e+02	0.0000	1591.0	6.92%	1229.0	4.60%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-53	-1.230e+02	0.0000	3864.0	16.80%	3533.3	13.23%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-50	-1.158e+02	0.0000	651.0	2.83%	397.5	1.49%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-48	-1.119e+02	0.0000	819.0	3.56%	546.1	2.04%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-47	-1.101e+02	0.0000	3370.0	14.65%	3064.1	11.47%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-47	-1.086e+02	0.0000	4402.0	19.14%	4160.2	15.57%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-45	-1.059e+02	0.0000	4038.0	17.56%	3784.7	14.17%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-44	-1.024e+02	0.0000	3569.0	15.52%	3302.6	12.36%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-43	-9.976e+01	0.0000	1249.0	5.43%	962.1	3.60%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-40	-9.419e+01	0.0000	393.0	1.71%	213.0	0.80%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-39	-9.000e+01	0.0000	2765.0	12.02%	2509.5	9.39%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-37	-8.575e+01	0.0000	1810.0	7.87%	1547.9	5.79%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-37	-8.531e+01	0.0000	1231.0	5.35%	978.7	3.66%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-35	-8.233e+01	0.0000	1011.0	4.40%	775.1	2.90%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-35	-8.193e+01	0.0000	388.0	1.69%	222.5	0.83%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-33	-7.609e+01	0.0000	420.0	1.83%	255.4	0.96%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-27	-6.432e+01	0.0000	1987.0	8.64%	1800.2	6.74%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-26	-6.159e+01	0.0000	830.0	3.61%	650.1	2.43%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-24	-5.637e+01	0.0000	7453.0	32.40%	7822.9	29.28%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-24	-5.609e+01	0.0000	228.0	0.99%	123.7	0.46%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-22	-5.256e+01	0.0000	704.0	3.06%	551.0	2.06%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-22	-5.168e+01	0.0000	780.0	3.39%	626.1	2.34%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-22	-5.148e+01	0.0000	1316.0	5.72%	1159.8	4.34%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-21	-5.012e+01	0.0000	124.0	0.54%	52.6	0.20%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-21	-4.946e+01	0.0000	740.0	3.22%	594.0	2.22%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-20	-4.810e+01	0.0000	7286.0	31.68%	7699.4	28.82%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-20	-4.697e+01	0.0000	232.0	1.01%	136.3	0.51%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-19	-4.494e+01	0.0000	1035.0	4.50%	897.9	3.36%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-18	-4.327e+01	0.0000	1865.0	8.11%	1761.3	6.59%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-18	-4.294e+01	0.0000	385.0	1.67%	274.3	1.03%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-17	-4.088e+01	0.0000	229.0	1.00%	141.8	0.53%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-16	-3.889e+01	0.0000	2354.0	10.23%	2304.8	8.63%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-16	-3.709e+01	0.0000	887.0	3.86%	774.7	2.90%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-15	-3.647e+01	0.0000	418.0	1.82%	317.4	1.19%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-12	-2.992e+01	0.0000	152.0	0.66%	91.6	0.34%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-12	-2.896e+01	0.0000	495.0	2.15%	409.4	1.53%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-12	-2.890e+01	0.0000	1160.0	5.04%	1087.3	4.07%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-12	-2.825e+01	0.0000	2710.0	11.78%	2758.6	10.33%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-11	-2.760e+01	0.0000	591.0	2.57%	509.0	1.91%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-11	-2.721e+01	0.0000	293.0	1.27%	220.4	0.82%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-11	-2.582e+01	0.0000	3198.0	13.90%	3314.6	12.41%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-10	-2.471e+01	0.0000	861.0	3.74%	794.8	2.97%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-10	-2.311e+01	0.0000	1469.0	6.39%	1445.6	5.41%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-9	-2.197e+01	0.0000	3169.0	13.78%	3315.9	12.41%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-9	-2.166e+01	0.0000	6571.0	28.57%	7150.0	26.76%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-9	-2.161e+01	0.0000	97.0	0.42%	56.4	0.21%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-9	-2.140e+01	0.0000	434.0	1.89%	371.1	1.39%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-9	-2.081e+01	0.0000	1629.0	7.08%	1632.4	6.11%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-8	-2.020e+01	0.0000	1143.0	4.97%	1113.6	4.17%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-8	-2.017e+01	0.0000	10733.0	46.66%	11948.5	44.72%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-8	-2.001e+01	0.0000	1796.0	7.81%	1819.5	6.81%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-8	-1.968e+01	0.0000	253.0	1.10%	199.5	0.75%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-8	-1.913e+01	0.0000	1899.0	8.26%	1938.2	7.25%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-8	-1.894e+01	0.0000	171.0	0.74%	124.2	0.46%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-7	-1.821e+01	0.0000	3189.0	13.86%	3373.5	12.63%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-7	-1.745e+01	0.0000	1258.0	5.47%	1253.3	4.69%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-7	-1.742e+01	0.0000	636.0	2.77%	592.0	2.22%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-7	-1.711e+01	0.0000	1317.0	5.73%	1319.4	4.94%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-7	-1.689e+01	0.0000	224.0	0.97%	178.4	0.67%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-7	-1.676e+01	0.0000	636.0	2.77%	595.4	2.23%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-7	-1.657e+01	0.0000	2898.0	12.60%	3065.7	11.48%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-6	-1.590e+01	0.0000	2985.0	12.98%	3169.9	11.87%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-6	-1.563e+01	0.0000	537.0	2.33%	497.5	1.86%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-6	-1.553e+01	0.0000	297.0	1.29%	253.9	0.95%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-6	-1.542e+01	0.0000	900.0	3.91%	882.0	3.30%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-6	-1.542e+01	0.0000	2479.0	10.78%	2610.3	9.77%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-6	-1.471e+01	0.0000	2488.0	10.82%	2627.0	9.83%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-6	-1.430e+01	0.0000	2822.0	12.27%	3004.2	11.24%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-6	-1.407e+01	0.0000	49.0	0.21%	26.8	0.10%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-6	-1.407e+01	0.0000	2032.0	8.83%	2127.0	7.96%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-5	-1.366e+01	0.0000	469.0	2.04%	435.1	1.63%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-5	-1.361e+01	0.0000	3824.0	16.63%	4138.4	15.49%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-5	-1.276e+01	0.0000	292.0	1.27%	257.9	0.97%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-5	-1.240e+01	0.0000	258.0	1.12%	224.2	0.84%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-5	-1.208e+01	0.0000	362.0	1.57%	331.1	1.24%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-5	-1.193e+01	0.0000	492.0	2.14%	467.2	1.75%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-5	-1.178e+01	0.0000	385.0	1.67%	356.3	1.33%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-4	-1.120e+01	0.0000	993.0	4.32%	1009.1	3.78%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-4	-1.091e+01	0.0000	900.0	3.91%	910.9	3.41%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-4	-1.065e+01	0.0000	1486.0	6.46%	1555.3	5.82%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-4	-1.011e+01	0.0001	2443.0	10.62%	2628.9	9.84%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-4	-9.975e+00	0.0001	89.0	0.39%	66.3	0.25%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-4	-9.953e+00	0.0001	125.0	0.54%	100.1	0.37%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-4	-9.668e+00	0.0001	3101.0	13.48%	3375.7	12.64%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-4	-9.631e+00	0.0001	297.0	1.29%	274.1	1.03%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-4	-9.585e+00	0.0001	174.0	0.76%	149.3	0.56%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-4	-9.324e+00	0.0002	257.0	1.12%	234.7	0.88%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-3	-9.189e+00	0.0002	324.0	1.41%	304.4	1.14%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-3	-8.665e+00	0.0003	1222.0	5.31%	1283.0	4.80%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-3	-8.629e+00	0.0003	613.0	2.67%	616.0	2.31%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e-3	-8.623e+00	0.0003	742.0	3.23%	755.4	2.83%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-3	-8.275e+00	0.0005	25.0	0.11%	13.7	0.05%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-3	-8.262e+00	0.0005	1553.0	6.75%	1654.5	6.19%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-3	-8.211e+00	0.0005	784.0	3.41%	804.4	3.01%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-3	-7.945e+00	0.0006	451.0	1.96%	445.5	1.67%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-3	-7.904e+00	0.0006	1068.0	4.64%	1119.0	4.19%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-3	-7.867e+00	0.0007	255.0	1.11%	238.8	0.89%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-3	-7.795e+00	0.0007	3999.0	17.39%	4424.1	16.56%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-3	-7.776e+00	0.0007	648.0	2.82%	659.9	2.47%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-3	-7.724e+00	0.0008	323.0	1.40%	310.8	1.16%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-3	-7.540e+00	0.0009	1016.0	4.42%	1065.5	3.99%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-3	-7.512e+00	0.0009	603.0	2.62%	612.7	2.29%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-3	-7.378e+00	0.0010	876.0	3.81%	912.1	3.41%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-3	-7.132e+00	0.0013	1286.0	5.59%	1369.7	5.13%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-3	-7.121e+00	0.0013	1707.0	7.42%	1840.4	6.89%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-2	-6.846e+00	0.0017	819.0	3.56%	854.8	3.20%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-2	-6.514e+00	0.0024	4278.0	18.60%	4767.5	17.84%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-2	-6.509e+00	0.0024	730.0	3.17%	759.5	2.84%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-6.380e+00	0.0027	304.0	1.32%	297.6	1.11%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-2	-6.082e+00	0.0036	376.0	1.63%	376.4	1.41%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-6.026e+00	0.0038	812.0	3.53%	854.6	3.20%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-5.779e+00	0.0049	81.0	0.35%	68.6	0.26%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-2	-5.552e+00	0.0061	6385.0	27.76%	7207.7	26.98%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-5.276e+00	0.0080	256.0	1.11%	253.0	0.95%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-5.167e+00	0.0088	247.0	1.07%	243.0	0.91%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-4.622e+00	0.0151	726.0	3.16%	773.6	2.90%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-4.600e+00	0.0154	403.0	1.75%	416.3	1.56%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-4.561e+00	0.0159	98.0	0.43%	89.9	0.34%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-4.406e+00	0.0184	3653.0	15.88%	4099.8	15.35%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-4.258e+00	0.0212	734.0	3.19%	786.1	2.94%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-4.257e+00	0.0212	2223.0	9.66%	2469.5	9.24%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e-1	-4.214e+00	0.0219	421.0	1.83%	439.7	1.65%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-4.193e+00	0.0222	40.0	0.17%	32.7	0.12%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-3.847e+00	0.0313	169.0	0.73%	167.4	0.63%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-1	-3.796e+00	0.0327	1198.0	5.21%	1314.5	4.92%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-3.770e+00	0.0334	5672.0	24.66%	6437.4	24.10%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-3.708e+00	0.0353	1934.0	8.41%	2151.8	8.05%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-3.681e+00	0.0361	87.0	0.38%	81.4	0.30%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-3.660e+00	0.0366	1227.0	5.33%	1349.0	5.05%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-3.600e+00	0.0386	1295.0	5.63%	1427.3	5.34%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-3.581e+00	0.0392	1684.0	7.32%	1869.9	7.00%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-3.549e+00	0.0402	97.0	0.42%	92.6	0.35%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-3.346e+00	0.0490	2471.0	10.74%	2772.5	10.38%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-3.061e+00	0.0648	75.0	0.33%	71.7	0.27%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-2.880e+00	0.0772	260.0	1.13%	273.5	1.02%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.649e+00	0.0967	948.0	4.12%	1050.3	3.93%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-2.556e+00	0.1054	4235.0	18.41%	4822.3	18.05%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-1	-2.384e+00	0.1246	1696.0	7.37%	1909.2	7.15%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.351e+00	0.1274	130.0	0.57%	134.2	0.50%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.351e+00	0.1274	130.0	0.57%	134.2	0.50%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.009e+00	0.1783	85.0	0.37%	87.5	0.33%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.830e+00	0.2121	1036.0	4.50%	1167.7	4.37%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.748e+00	0.2291	787.0	3.42%	884.9	3.31%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.731e+00	0.2318	239.0	1.04%	261.8	0.98%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.620e+00	0.2577	327.0	1.42%	362.6	1.36%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.581e+00	0.2664	138.0	0.60%	149.4	0.56%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.314e+00	0.3463	893.0	3.88%	1016.0	3.80%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.285e+00	0.3544	2011.0	8.74%	2306.9	8.63%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.273e+00	0.3567	167.0	0.73%	185.8	0.70%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.162e+00	0.3967	554.0	2.41%	630.5	2.36%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.087e+00	0.4256	3624.0	15.76%	4182.6	15.66%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.044e+00	0.4420	932.0	4.05%	1069.4	4.00%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-9.796e-01	0.4688	2954.0	12.84%	3412.8	12.77%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-9.512e-01	0.4799	552.0	2.40%	633.8	2.37%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-9.076e-01	0.4963	66.0	0.29%	74.9	0.28%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-9.076e-01	0.4963	66.0	0.29%	74.5	0.28%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-8.799e-01	0.5077	2396.0	10.42%	2771.1	10.37%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-8.347e-01	0.5285	20.0	0.09%	22.4	0.08%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-7.868e-01	0.5517	849.0	3.69%	983.0	3.68%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-7.839e-01	0.5517	3606.0	15.68%	4181.9	15.65%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-7.726e-01	0.5542	576.0	2.50%	666.1	2.49%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-7.497e-01	0.5643	3882.0	16.88%	4504.3	16.86%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-7.095e-01	0.5846	9.0	0.04%	10.4	0.04%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.803e-01	0.5990	662.0	2.88%	769.4	2.88%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.451e-01	0.6175	170.0	0.74%	198.5	0.74%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-5.937e-01	0.6469	63.0	0.27%	75.0	0.28%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.666e-01	0.6616	871.0	3.79%	1017.2	3.81%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-5.615e-01	0.6618	5579.0	24.26%	6493.3	24.30%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-5.165e-01	0.6891	5806.0	25.24%	6762.5	25.31%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.075e-01	0.6920	847.0	3.68%	992.4	3.71%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-5.047e-01	0.6920	24.0	0.10%	29.4	0.11%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.965e-01	0.6932	432.0	1.88%	508.2	1.90%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-4.861e-01	0.6972	99.0	0.43%	118.0	0.44%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-4.860e-01	0.6972	3736.0	16.24%	4358.7	16.31%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-3.575e-01	0.7856	1100.0	4.78%	1297.2	4.86%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-3.003e-01	0.8281	27.0	0.12%	35.1	0.13%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.801e-01	0.8412	219.0	0.95%	266.9	1.00%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-2.343e-01	0.8767	308.0	1.34%	374.0	1.40%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.153e-01	0.8895	3442.0	14.96%	4052.9	15.17%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.935e-01	0.9051	967.0	4.20%	1156.5	4.33%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.086e-01	0.9808	2620.0	11.39%	3114.1	11.66%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-8.599e-02	0.9988	3481.0	15.13%	4131.6	15.46%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.568e-02	0.9988	3661.0	15.92%	4342.9	16.26%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-8.143e-02	0.9988	309.0	1.34%	388.1	1.45%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.598e-02	1.0000	303.0	1.32%	384.0	1.44%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-5.736e-02	1.0000	157.0	0.68%	206.3	0.77%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-3.622e-02	1.0000	172.0	0.75%	228.5	0.86%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.362e-02	1.0000	327.0	1.42%	419.3	1.57%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.538e-02	1.0000	813.0	3.53%	1009.3	3.78%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-2.189e-02	1.0000	738.0	3.21%	921.8	3.45%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.650e-02	1.0000	681.0	2.96%	856.4	3.21%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.229e-02	1.0000	755.0	3.28%	949.6	3.55%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.924e-03	1.0000	372.0	1.62%	490.9	1.84%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.969e-03	1.0000	515.0	2.24%	676.9	2.53%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-7.740e-04	1.0000	1087.0	4.73%	1384.9	5.18%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.660e-04	1.0000	218.0	0.95%	319.7	1.20%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.540e-04	1.0000	4464.0	19.41%	5439.6	20.36%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.200e-05	1.0000	28.0	0.12%	63.1	0.24%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.000e-06	1.0000	892.0	3.88%	1203.8	4.51%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	1153.0	5.01%	1595.7	5.97%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	212.0	0.92%	386.4	1.45%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	7650.0	33.26%	9567.0	35.81%