Information for motif12


Reverse Opposite:

p-value:1e-89
log p-value:-2.060e+02
Information Content per bp:1.704
Number of Target Sequences with motif1608.0
Percentage of Target Sequences with motif7.13%
Number of Background Sequences with motif1137.2
Percentage of Background Sequences with motif4.19%
Average Position of motif in Targets100.6 +/- 55.0bp
Average Position of motif in Background92.2 +/- 59.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0067.1_Pax2/Jaspar

Match Rank:1
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:ACGTGACG
NCGTGACN

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:2
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:ACGTGACG
ACGTCA--

CRE(bZIP)/Promoter/Homer

Match Rank:3
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----ACGTGACG
CGGTGACGTCAC-

E-box(HLH)/Promoter/Homer

Match Rank:4
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--ACGTGACG--
TCACGTGACCGG

MA0093.2_USF1/Jaspar

Match Rank:5
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---ACGTGACG
GCCACGTGACC

MA0018.2_CREB1/Jaspar

Match Rank:6
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--ACGTGACG
TGACGTCA--

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--ACGTGACG
TCACGTGACC

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:8
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-ACGTGACG
TACGTGCV-

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-ACGTGACG
CACGTGDC-

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:10
Score:0.72
Offset:-9
Orientation:forward strand
Alignment:---------ACGTGACG-----
GGAAGAGTCACGTGACCAATAC