Information for motif13


Reverse Opposite:

p-value:1e-82
log p-value:-1.894e+02
Information Content per bp:1.794
Number of Target Sequences with motif76.0
Percentage of Target Sequences with motif0.34%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets103.6 +/- 44.9bp
Average Position of motif in Background77.0 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:TCTGACTGGCAG-
-NTGATTGACAGN

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TCTGACTGGCAG--
--TGAGTGACAGSC

MA0498.1_Meis1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TCTGACTGGCAG--
NNNTGAGTGACAGCT

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCTGACTGGCAG--
-CTGTCTGTCACCT

PB0195.1_Zbtb3_2/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TCTGACTGGCAG---
CAATCACTGGCAGAAT

MA0100.2_Myb/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCTGACTGGCAG
-CCAACTGCCA-

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TCTGACTGGCAG--
--TGTCTGDCACCT

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TCTGACTGGCAG
-CCAACTGCCA-

PB0149.1_Myb_2/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TCTGACTGGCAG--
CGACCAACTGCCATGC

MA0099.2_JUN::FOS/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TCTGACTGGCAG
--TGACTCA---