Information for motif18


Reverse Opposite:

p-value:1e-59
log p-value:-1.369e+02
Information Content per bp:1.535
Number of Target Sequences with motif468.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif239.6
Percentage of Background Sequences with motif0.88%
Average Position of motif in Targets98.9 +/- 56.0bp
Average Position of motif in Background92.3 +/- 50.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0114.2_HNF4A/Jaspar

Match Rank:1
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--GGDCAAAGKTCA-
NAGNNCAAAGTCCAN

MA0484.1_HNF4G/Jaspar

Match Rank:2
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---GGDCAAAGKTCA
AGAGTCCAAAGTCCA

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----GGDCAAAGKTCA
CANAGNNCAAAGTCCA

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--GGDCAAAGKTCA
TAGGGCAAAGGTCA

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--GGDCAAAGKTCA
GAGGTCAAAGGTCA

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:6
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---GGDCAAAGKTCA
GTAGGGCAAAGGTCA

MA0017.1_NR2F1/Jaspar

Match Rank:7
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--GGDCAAAGKTCA
AGGTTCAAAGGTCA

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--GGDCAAAGKTCA
TGGGGCAAAGGTCA

MA0504.1_NR2C2/Jaspar

Match Rank:9
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---GGDCAAAGKTCA
AGGGGTCAGAGGTCA

MA0512.1_Rxra/Jaspar

Match Rank:10
Score:0.85
Offset:3
Orientation:forward strand
Alignment:GGDCAAAGKTCA--
---CAAAGGTCAGA