Information for motif2


Reverse Opposite:

p-value:1e-513
log p-value:-1.183e+03
Information Content per bp:1.704
Number of Target Sequences with motif5788.0
Percentage of Target Sequences with motif25.65%
Number of Background Sequences with motif3663.5
Percentage of Background Sequences with motif13.49%
Average Position of motif in Targets99.8 +/- 53.6bp
Average Position of motif in Background91.8 +/- 59.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.55
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL003.1_GC-box/Jaspar

Match Rank:1
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--GCYCCGCCCY--
NAGCCCCGCCCCCN

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-GCYCCGCCCY-
GGCCCCGCCCCC

MA0516.1_SP2/Jaspar

Match Rank:3
Score:0.90
Offset:0
Orientation:forward strand
Alignment:GCYCCGCCCY-----
GCCCCGCCCCCTCCC

MA0079.3_SP1/Jaspar

Match Rank:4
Score:0.90
Offset:0
Orientation:forward strand
Alignment:GCYCCGCCCY-
GCCCCGCCCCC

MA0599.1_KLF5/Jaspar

Match Rank:5
Score:0.88
Offset:0
Orientation:forward strand
Alignment:GCYCCGCCCY
GCCCCGCCCC

PB0039.1_Klf7_1/Jaspar

Match Rank:6
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---GCYCCGCCCY---
TCGACCCCGCCCCTAT

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:GCYCCGCCCY
GCCMCRCCCH

MA0039.2_Klf4/Jaspar

Match Rank:8
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:GCYCCGCCCY
GCCCCACCCA

PB0180.1_Sp4_2/Jaspar

Match Rank:9
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---GCYCCGCCCY--
NNGGCCACGCCTTTN

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-GCYCCGCCCY------
GGTCCCGCCCCCTTCTC