Information for motif20


Reverse Opposite:

p-value:1e-39
log p-value:-9.166e+01
Information Content per bp:1.810
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets114.3 +/- 58.1bp
Average Position of motif in Background114.8 +/- 64.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0164.1_Nr2e3/Jaspar

Match Rank:1
Score:0.68
Offset:6
Orientation:reverse strand
Alignment:CCACAAAAGCTT-
------AAGCTTG

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCACAAAAGCTT
NWAACCACADNN----

MA0002.2_RUNX1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCACAAAAGCTT
AAACCACAGAN----

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCACAAAAGCTT
-RACAAWGG---

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCACAAAAGCTT
AAACCACANN-----

PH0115.1_Nkx2-6/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCACAAAAGCTT
TAAGCCACTTAACATT

MA0511.1_RUNX2/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CCACAAAAGCTT
CAAACCACAAACCCC-

MA0130.1_ZNF354C/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCACAAAAGCTT
ATCCAC--------

MA0143.3_Sox2/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCACAAAAGCTT
-AACAAAGG---

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCACAAAAGCTT
AAACCACAGC-----