Information for motif28


Reverse Opposite:

p-value:1e-3
log p-value:-8.005e+00
Information Content per bp:1.530
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.04%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets98.6 +/- 53.0bp
Average Position of motif in Background99.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.8
Multiplicity (# of sites on avg that occur together)3.38
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0163.1_Six3/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGTATC------
GATAGGGTATCACTAAT

PB0125.1_Gata3_2/Jaspar

Match Rank:2
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------AGAGTGTATC------
TTTTGTAGATTTTATCGACTTA

PH0162.1_Six2/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGTATC------
AATGGGGTATCACGTTT

PH0165.1_Six6_1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGTATC------
AATAGGGTATCAATTAT

PH0161.1_Six1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGTATC------
GATGGGGTATCATTTTT

PB0059.1_Six6_1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGTATC------
AATAGGGTATCATATAT

PH0166.1_Six6_2/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGTATC------
AATAGGGTATCAATATT

GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------AGAGTGTATC----
NNNNNBAGATAWYATCTVHN

MA0032.1_FOXC1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGAGTGTATC
GGTAAGTA--

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGAGTGTATC
TTGAGTGSTT-