Information for motif6


Reverse Opposite:

p-value:1e-156
log p-value:-3.600e+02
Information Content per bp:1.706
Number of Target Sequences with motif1128.0
Percentage of Target Sequences with motif5.00%
Number of Background Sequences with motif552.9
Percentage of Background Sequences with motif2.04%
Average Position of motif in Targets101.6 +/- 53.1bp
Average Position of motif in Background91.7 +/- 62.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--CCWATTGGHR
AGCCAATCGG--

PH0089.1_Isx/Jaspar

Match Rank:2
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----CCWATTGGHR--
ACNNCTAATTAGNNNN

MA0502.1_NFYB/Jaspar

Match Rank:3
Score:0.74
Offset:-7
Orientation:forward strand
Alignment:-------CCWATTGGHR
AAATGGACCAATCAG--

PH0109.1_Nkx1-1/Jaspar

Match Rank:4
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CCWATTGGHR---
TGCGCTAATTAGTGGGA

MA0060.2_NFYA/Jaspar

Match Rank:5
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----CCWATTGGHR----
TGGACCAATCAGCACTCT

PH0107.1_Msx2/Jaspar

Match Rank:6
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CCWATTGGHR--
GAAGACCAATTAGCGCT

PH0033.1_Gbx1/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CCWATTGGHR---
TNCACTAATTAGTNNNN

PH0127.1_Nobox/Jaspar

Match Rank:8
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CCWATTGGHR--
GNTNNCTAATTAGNNCG

PH0034.1_Gbx2/Jaspar

Match Rank:9
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CCWATTGGHR--
AANCGCTAATTAGCNNN

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCWATTGGHR
ACTAGCCAATCA---