Information for motif9


Reverse Opposite:

p-value:1e-96
log p-value:-2.223e+02
Information Content per bp:1.840
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif0.29%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets100.8 +/- 45.2bp
Average Position of motif in Background68.7 +/- 47.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--TGTCATTCAAGA
NCTGTCAATCAN--

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---TGTCATTCAAGA
GSCTGTCACTCA---

MA0498.1_Meis1/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TGTCATTCAAGA
AGCTGTCACTCACCT

MA0067.1_Pax2/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TGTCATTCAAGA
AGTCACGC----

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TGTCATTCAAGA
-GTCATN-----

PB0169.1_Sox15_2/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TGTCATTCAAGA
TTGAATGAAATTCGA--

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGTCATTCAAGA
AGCCACTCAAG-

PB0028.1_Hbp1_1/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGTCATTCAAGA-
NNCATTCATTCATNNN

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------TGTCATTCAAGA
NNNCAGCTGTCAATATN--

PH0164.1_Six4/Jaspar

Match Rank:10
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------TGTCATTCAAGA
TNNNNGGTGTCATNTNT--