Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 22563)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 27183)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-463	-1.067e+03	0.0000	3337.0	14.79%	1677.2	6.17%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-462	-1.065e+03	0.0000	2856.0	12.66%	1311.6	4.83%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-462	-1.064e+03	0.0000	3490.0	15.46%	1801.3	6.63%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-406	-9.368e+02	0.0000	3427.0	15.19%	1862.7	6.86%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-365	-8.415e+02	0.0000	2981.0	13.21%	1586.9	5.84%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-350	-8.082e+02	0.0000	2540.0	11.25%	1266.6	4.66%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-341	-7.858e+02	0.0000	2218.0	9.83%	1039.4	3.83%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-326	-7.529e+02	0.0000	3811.0	16.89%	2383.6	8.77%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-303	-6.999e+02	0.0000	2022.0	8.96%	957.2	3.52%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-272	-6.285e+02	0.0000	2961.0	13.12%	1784.0	6.57%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-271	-6.243e+02	0.0000	6702.0	29.70%	5392.7	19.85%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-178	-4.121e+02	0.0000	4180.0	18.52%	3241.2	11.93%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-177	-4.076e+02	0.0000	1309.0	5.80%	650.8	2.40%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-150	-3.459e+02	0.0000	2349.0	10.41%	1601.8	5.90%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-147	-3.407e+02	0.0000	3265.0	14.47%	2476.1	9.12%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-141	-3.255e+02	0.0000	3532.0	15.65%	2768.8	10.19%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-141	-3.254e+02	0.0000	2706.0	11.99%	1966.7	7.24%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-140	-3.229e+02	0.0000	2938.0	13.02%	2192.1	8.07%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-135	-3.112e+02	0.0000	2915.0	12.92%	2191.1	8.07%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-130	-3.003e+02	0.0000	1846.0	8.18%	1212.4	4.46%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-123	-2.854e+02	0.0000	2041.0	9.04%	1410.9	5.19%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-118	-2.724e+02	0.0000	4096.0	18.15%	3458.7	12.73%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-106	-2.460e+02	0.0000	410.0	1.82%	132.8	0.49%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-106	-2.441e+02	0.0000	3364.0	14.91%	2776.2	10.22%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-103	-2.381e+02	0.0000	4338.0	19.22%	3800.3	13.99%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-92	-2.126e+02	0.0000	1153.0	5.11%	720.3	2.65%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-91	-2.112e+02	0.0000	4462.0	19.77%	4009.3	14.76%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-89	-2.050e+02	0.0000	6335.0	28.07%	6073.0	22.36%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-87	-2.012e+02	0.0000	1947.0	8.63%	1465.9	5.40%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-85	-1.965e+02	0.0000	685.0	3.04%	353.1	1.30%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-82	-1.898e+02	0.0000	422.0	1.87%	168.0	0.62%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-79	-1.827e+02	0.0000	512.0	2.27%	235.4	0.87%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-78	-1.796e+02	0.0000	2000.0	8.86%	1559.5	5.74%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-77	-1.788e+02	0.0000	3325.0	14.73%	2904.2	10.69%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-76	-1.750e+02	0.0000	526.0	2.33%	251.3	0.93%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-71	-1.652e+02	0.0000	1336.0	5.92%	953.7	3.51%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-70	-1.623e+02	0.0000	4647.0	20.59%	4369.5	16.09%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-70	-1.621e+02	0.0000	2094.0	9.28%	1690.3	6.22%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-69	-1.598e+02	0.0000	8282.0	36.70%	8467.3	31.17%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-67	-1.547e+02	0.0000	1163.0	5.15%	811.4	2.99%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-66	-1.527e+02	0.0000	4251.0	18.84%	3973.5	14.63%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-64	-1.481e+02	0.0000	941.0	4.17%	621.8	2.29%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-63	-1.454e+02	0.0000	1038.0	4.60%	712.4	2.62%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-59	-1.367e+02	0.0000	420.0	1.86%	203.8	0.75%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-59	-1.363e+02	0.0000	1904.0	8.44%	1561.6	5.75%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-55	-1.274e+02	0.0000	1278.0	5.66%	967.3	3.56%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-53	-1.232e+02	0.0000	4117.0	18.24%	3938.8	14.50%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-52	-1.220e+02	0.0000	1533.0	6.79%	1226.3	4.51%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-49	-1.141e+02	0.0000	466.0	2.06%	259.5	0.96%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-49	-1.138e+02	0.0000	659.0	2.92%	421.3	1.55%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-48	-1.116e+02	0.0000	1143.0	5.06%	869.0	3.20%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-45	-1.050e+02	0.0000	366.0	1.62%	189.8	0.70%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-44	-1.030e+02	0.0000	402.0	1.78%	219.7	0.81%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-44	-1.025e+02	0.0000	774.0	3.43%	540.2	1.99%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-44	-1.023e+02	0.0000	676.0	3.00%	452.5	1.67%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-43	-1.002e+02	0.0000	4396.0	19.48%	4345.0	16.00%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-38	-8.858e+01	0.0000	3361.0	14.89%	3254.4	11.98%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-37	-8.747e+01	0.0000	690.0	3.06%	488.5	1.80%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-34	-7.873e+01	0.0000	3627.0	16.07%	3593.0	13.23%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-34	-7.831e+01	0.0000	738.0	3.27%	549.3	2.02%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-33	-7.757e+01	0.0000	922.0	4.09%	728.0	2.68%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-33	-7.735e+01	0.0000	2003.0	8.88%	1834.4	6.75%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-31	-7.247e+01	0.0000	318.0	1.41%	183.4	0.67%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-31	-7.209e+01	0.0000	395.0	1.75%	248.4	0.91%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-31	-7.165e+01	0.0000	323.0	1.43%	188.3	0.69%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-30	-7.058e+01	0.0000	152.0	0.67%	60.6	0.22%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-29	-6.864e+01	0.0000	2699.0	11.96%	2618.9	9.64%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-29	-6.759e+01	0.0000	860.0	3.81%	689.2	2.54%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-27	-6.326e+01	0.0000	395.0	1.75%	260.5	0.96%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-23	-5.479e+01	0.0000	1324.0	5.87%	1198.6	4.41%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-23	-5.362e+01	0.0000	7510.0	33.28%	8198.3	30.18%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-22	-5.203e+01	0.0000	1972.0	8.74%	1901.3	7.00%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-22	-5.199e+01	0.0000	2248.0	9.96%	2203.0	8.11%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-21	-4.948e+01	0.0000	2163.0	9.58%	2121.1	7.81%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-21	-4.864e+01	0.0000	408.0	1.81%	295.2	1.09%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-20	-4.815e+01	0.0000	1034.0	4.58%	918.7	3.38%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-20	-4.668e+01	0.0000	657.0	2.91%	539.9	1.99%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-18	-4.180e+01	0.0000	447.0	1.98%	345.0	1.27%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-17	-4.118e+01	0.0000	227.0	1.01%	145.0	0.53%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-17	-4.050e+01	0.0000	1088.0	4.82%	1001.8	3.69%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-17	-3.953e+01	0.0000	282.0	1.25%	195.7	0.72%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-15	-3.670e+01	0.0000	332.0	1.47%	246.5	0.91%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-15	-3.660e+01	0.0000	2714.0	12.03%	2805.5	10.33%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-15	-3.564e+01	0.0000	696.0	3.08%	609.9	2.25%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-15	-3.540e+01	0.0000	1061.0	4.70%	992.3	3.65%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-14	-3.338e+01	0.0000	1401.0	6.21%	1367.2	5.03%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-13	-3.133e+01	0.0000	1193.0	5.29%	1151.2	4.24%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-12	-2.943e+01	0.0000	1147.0	5.08%	1110.9	4.09%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-12	-2.909e+01	0.0000	229.0	1.01%	164.4	0.61%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-12	-2.839e+01	0.0000	232.0	1.03%	168.4	0.62%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-12	-2.838e+01	0.0000	1112.0	4.93%	1077.2	3.97%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-12	-2.807e+01	0.0000	1142.0	5.06%	1112.0	4.09%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-11	-2.752e+01	0.0000	536.0	2.38%	470.9	1.73%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-11	-2.727e+01	0.0000	784.0	3.47%	730.2	2.69%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-11	-2.634e+01	0.0000	1277.0	5.66%	1267.2	4.67%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-11	-2.633e+01	0.0000	7042.0	31.20%	7909.6	29.12%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-11	-2.613e+01	0.0000	364.0	1.61%	300.6	1.11%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-11	-2.594e+01	0.0000	3041.0	13.47%	3254.4	11.98%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-10	-2.530e+01	0.0000	754.0	3.34%	706.7	2.60%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-10	-2.458e+01	0.0000	636.0	2.82%	584.2	2.15%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-10	-2.442e+01	0.0000	583.0	2.58%	529.2	1.95%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-10	-2.433e+01	0.0000	840.0	3.72%	802.5	2.95%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-10	-2.424e+01	0.0000	144.0	0.64%	95.6	0.35%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-10	-2.395e+01	0.0000	1650.0	7.31%	1694.3	6.24%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-10	-2.344e+01	0.0000	928.0	4.11%	901.7	3.32%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-10	-2.332e+01	0.0000	2493.0	11.05%	2650.4	9.76%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-9	-2.294e+01	0.0000	106.0	0.47%	64.4	0.24%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-9	-2.238e+01	0.0000	299.0	1.32%	245.4	0.90%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-8	-1.959e+01	0.0000	1793.0	7.94%	1885.5	6.94%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-8	-1.902e+01	0.0000	2468.0	10.94%	2658.0	9.79%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-8	-1.861e+01	0.0000	1436.0	6.36%	1490.4	5.49%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-7	-1.837e+01	0.0000	2988.0	13.24%	3262.2	12.01%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-7	-1.771e+01	0.0000	105.0	0.47%	70.7	0.26%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-7	-1.767e+01	0.0000	828.0	3.67%	821.1	3.02%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-7	-1.751e+01	0.0000	2257.0	10.00%	2430.1	8.95%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-7	-1.670e+01	0.0000	6480.0	28.71%	7370.6	27.13%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-7	-1.646e+01	0.0000	2495.0	11.06%	2713.6	9.99%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-7	-1.642e+01	0.0000	277.0	1.23%	239.8	0.88%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-6	-1.526e+01	0.0000	253.0	1.12%	218.0	0.80%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-6	-1.439e+01	0.0000	2983.0	13.22%	3299.6	12.15%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-6	-1.401e+01	0.0000	5515.0	24.44%	6270.7	23.08%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-6	-1.392e+01	0.0000	144.0	0.64%	113.9	0.42%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-5	-1.378e+01	0.0000	452.0	2.00%	432.1	1.59%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-5	-1.343e+01	0.0000	91.0	0.40%	64.5	0.24%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-5	-1.335e+01	0.0000	3717.0	16.47%	4167.6	15.34%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-5	-1.328e+01	0.0000	1198.0	5.31%	1261.1	4.64%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-5	-1.277e+01	0.0000	1385.0	6.14%	1478.0	5.44%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-5	-1.263e+01	0.0000	20.0	0.09%	7.0	0.03%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-5	-1.202e+01	0.0000	387.0	1.71%	370.9	1.37%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-4	-1.106e+01	0.0000	395.0	1.75%	383.9	1.41%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-4	-1.080e+01	0.0000	354.0	1.57%	340.6	1.25%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-4	-1.070e+01	0.0000	498.0	2.21%	497.4	1.83%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-4	-1.040e+01	0.0001	37.0	0.16%	21.6	0.08%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-4	-1.016e+01	0.0001	1736.0	7.69%	1904.2	7.01%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-4	-9.739e+00	0.0001	2694.0	11.94%	3021.6	11.12%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-4	-9.536e+00	0.0001	3126.0	13.85%	3529.6	12.99%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-4	-9.376e+00	0.0002	358.0	1.59%	351.2	1.29%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-3	-8.721e+00	0.0003	2955.0	13.09%	3341.5	12.30%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-3	-8.136e+00	0.0005	1498.0	6.64%	1652.4	6.08%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-3	-7.734e+00	0.0008	2551.0	11.30%	2883.6	10.62%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-3	-7.708e+00	0.0008	589.0	2.61%	617.5	2.27%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-3	-7.510e+00	0.0009	947.0	4.20%	1026.0	3.78%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-3	-7.373e+00	0.0011	1548.0	6.86%	1719.7	6.33%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-6.776e+00	0.0019	100.0	0.44%	87.2	0.32%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-6.348e+00	0.0030	1260.0	5.58%	1398.1	5.15%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-2	-6.339e+00	0.0030	350.0	1.55%	359.3	1.32%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-6.334e+00	0.0030	264.0	1.17%	264.8	0.97%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-2	-6.070e+00	0.0038	96.0	0.43%	85.7	0.32%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-5.855e+00	0.0047	1774.0	7.86%	2003.4	7.38%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-5.452e+00	0.0070	792.0	3.51%	868.3	3.20%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-2	-5.430e+00	0.0071	115.0	0.51%	107.5	0.40%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-2	-5.415e+00	0.0072	1086.0	4.81%	1208.3	4.45%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-2	-5.188e+00	0.0090	3668.0	16.25%	4247.4	15.64%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-2	-5.181e+00	0.0090	201.0	0.89%	201.0	0.74%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-4.910e+00	0.0117	740.0	3.28%	814.4	3.00%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-4.643e+00	0.0152	1296.0	5.74%	1463.3	5.39%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-4.539e+00	0.0167	93.0	0.41%	87.8	0.32%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-4.496e+00	0.0174	230.0	1.02%	237.7	0.88%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-4.221e+00	0.0227	312.0	1.38%	331.9	1.22%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-3.840e+00	0.0330	810.0	3.59%	908.7	3.35%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-3.818e+00	0.0336	802.0	3.55%	899.1	3.31%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-3.609e+00	0.0411	84.0	0.37%	81.9	0.30%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-3.598e+00	0.0413	579.0	2.57%	643.6	2.37%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-1	-3.517e+00	0.0445	1213.0	5.37%	1384.4	5.10%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.453e+00	0.0472	237.0	1.05%	252.4	0.93%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-3.310e+00	0.0541	607.0	2.69%	679.9	2.50%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.261e+00	0.0565	2044.0	9.06%	2369.4	8.72%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-3.061e+00	0.0686	1991.0	8.82%	2311.1	8.51%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-3.051e+00	0.0689	10218.0	45.28%	12148.6	44.72%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e-1	-3.027e+00	0.0701	711.0	3.15%	804.3	2.96%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-3.024e+00	0.0701	159.0	0.70%	167.1	0.62%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-2.897e+00	0.0789	413.0	1.83%	459.4	1.69%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-2.828e+00	0.0841	544.0	2.41%	612.4	2.25%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-2.817e+00	0.0845	1964.0	8.70%	2286.0	8.42%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-2.707e+00	0.0938	83.0	0.37%	84.1	0.31%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-2.701e+00	0.0939	1366.0	6.05%	1580.9	5.82%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e-1	-2.553e+00	0.1082	12.0	0.05%	9.7	0.04%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-2.391e+00	0.1265	35.0	0.16%	33.1	0.12%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.295e+00	0.1385	558.0	2.47%	636.8	2.34%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.204e+00	0.1509	6046.0	26.79%	7179.2	26.43%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.183e+00	0.1532	3642.0	16.14%	4304.0	15.84%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.132e+00	0.1603	433.0	1.92%	492.5	1.81%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.118e+00	0.1617	4258.0	18.87%	5042.4	18.56%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.097e+00	0.1642	760.0	3.37%	877.6	3.23%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.040e+00	0.1728	631.0	2.80%	726.3	2.67%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.864e+00	0.2051	4308.0	19.09%	5113.5	18.82%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.724e+00	0.2346	913.0	4.05%	1066.7	3.93%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.550e+00	0.2778	354.0	1.57%	408.3	1.50%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.516e+00	0.2858	31.0	0.14%	32.5	0.12%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.457e+00	0.3017	888.0	3.93%	1043.5	3.84%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.328e+00	0.3415	161.0	0.71%	184.3	0.68%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.232e+00	0.3738	126.0	0.56%	145.0	0.53%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.144e+00	0.4058	909.0	4.03%	1077.8	3.97%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.109e+00	0.4182	67.0	0.30%	76.6	0.28%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.101e+00	0.4194	707.0	3.13%	837.1	3.08%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.084e+00	0.4245	257.0	1.14%	301.6	1.11%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.071e+00	0.4278	897.0	3.97%	1065.1	3.92%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.001e+00	0.4565	4676.0	20.72%	5603.7	20.63%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.151e-01	0.5471	160.0	0.71%	190.9	0.70%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-7.603e-01	0.5750	2337.0	10.36%	2808.4	10.34%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-7.082e-01	0.6028	1617.0	7.17%	1945.2	7.16%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.718e-01	0.6220	162.0	0.72%	195.7	0.72%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-5.465e-01	0.7016	463.0	2.05%	562.3	2.07%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-4.261e-01	0.7875	62.0	0.27%	78.6	0.29%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.670e-01	0.8314	22.0	0.10%	29.6	0.11%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.456e-01	0.8452	541.0	2.40%	666.9	2.46%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-3.368e-01	0.8486	3013.0	13.35%	3661.4	13.48%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.866e-01	0.8880	3482.0	15.43%	4236.0	15.59%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.725e-01	0.8963	830.0	3.68%	1023.3	3.77%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.667e-01	0.8972	3639.0	16.12%	4428.7	16.30%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-2.420e-01	0.9153	763.0	3.38%	944.8	3.48%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.124e-01	0.9383	236.0	1.05%	300.8	1.11%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.773e-01	0.9672	579.0	2.57%	725.1	2.67%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.761e-01	0.9672	231.0	1.02%	296.6	1.09%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.695e-01	0.9672	668.0	2.96%	835.4	3.08%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.485e-01	0.9818	825.0	3.66%	1030.5	3.79%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.484e-01	0.9818	23.0	0.10%	34.0	0.13%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-9.665e-02	1.0000	1012.0	4.48%	1269.0	4.67%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-7.054e-02	1.0000	374.0	1.66%	485.4	1.79%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.679e-02	1.0000	5553.0	24.61%	6802.9	25.04%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.277e-02	1.0000	112.0	0.50%	155.3	0.57%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.277e-02	1.0000	112.0	0.50%	155.3	0.57%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-6.274e-02	1.0000	232.0	1.03%	308.8	1.14%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-5.944e-02	1.0000	1114.0	4.94%	1403.1	5.17%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-5.734e-02	1.0000	1124.0	4.98%	1416.0	5.21%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-5.496e-02	1.0000	394.0	1.75%	513.2	1.89%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.003e-02	1.0000	314.0	1.39%	416.9	1.53%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.937e-02	1.0000	231.0	1.02%	317.3	1.17%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-9.279e-03	1.0000	55.0	0.24%	89.1	0.33%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.385e-03	1.0000	35.0	0.16%	65.1	0.24%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.283e-03	1.0000	3154.0	13.98%	3976.3	14.64%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.212e-03	1.0000	2352.0	10.42%	3001.5	11.05%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-4.880e-04	1.0000	3203.0	14.19%	4066.9	14.97%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-4.100e-04	1.0000	574.0	2.54%	790.7	2.91%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.690e-04	1.0000	3572.0	15.83%	4539.9	16.71%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.010e-04	1.0000	3693.0	16.36%	4697.9	17.29%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-6.800e-05	1.0000	5299.0	23.48%	6673.1	24.57%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.500e-05	1.0000	3273.0	14.50%	4210.6	15.50%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-9.000e-06	1.0000	281.0	1.25%	431.6	1.59%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.000e-06	1.0000	232.0	1.03%	373.6	1.38%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.000e-06	1.0000	159.0	0.70%	272.5	1.00%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-0.000e+00	1.0000	309.0	1.37%	487.0	1.79%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	862.0	3.82%	1222.3	4.50%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-0.000e+00	1.0000	695.0	3.08%	1008.5	3.71%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	1159.0	5.14%	1614.8	5.94%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	0.000e+00	1.0000	7522.0	33.33%	9804.5	36.09%