Information for motif12


Reverse Opposite:

p-value:1e-43
log p-value:-9.985e+01
Information Content per bp:1.612
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif0.33%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets124.7 +/- 53.1bp
Average Position of motif in Background151.4 +/- 14.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0011.1_Alx1_2/Jaspar

Match Rank:1
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----TTAACTAATGTC
NNNAATTAATTAANGNG

PH0093.1_Lhx3/Jaspar

Match Rank:2
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----TTAACTAATGTC
NNTATTTAATTAATTNN

PH0101.1_Lmx1b/Jaspar

Match Rank:3
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----TTAACTAATGTC
AGTTTTTAATTAATTTG

PH0095.1_Lhx5/Jaspar

Match Rank:4
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----TTAACTAATGTC
ANNATTTAATTAATTNN

PH0072.1_Hoxc8/Jaspar

Match Rank:5
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----TTAACTAATGTC
TTGGGGTAATTAACGT-

PH0136.1_Phox2b/Jaspar

Match Rank:6
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----TTAACTAATGTC-
CNNNTTAATTAATTNNN

PH0062.1_Hoxb7/Jaspar

Match Rank:7
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TTAACTAATGTC-
GTAGTAATTAATGCAA

PH0173.1_Uncx/Jaspar

Match Rank:8
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----TTAACTAATGTC-
CNCNTTAATTAATTANN

PH0153.1_Prop1/Jaspar

Match Rank:9
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----TTAACTAATGTC
GNNTNTTAATTAATNCN

PH0135.1_Phox2a/Jaspar

Match Rank:10
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---TTAACTAATGTC-
NNACTAATTAATNNNN