Information for motif19


Reverse Opposite:

p-value:1e-29
log p-value:-6.694e+01
Information Content per bp:1.714
Number of Target Sequences with motif71.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif11.9
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets85.6 +/- 52.2bp
Average Position of motif in Background98.6 +/- 44.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.51
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0026.1_Gm397_1/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----AGTGCACACCAT-
CAGATGTGCACATACGT

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----AGTGCACACCAT-
TACATGTGCACATAAAA

PB0099.1_Zfp691_1/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----AGTGCACACCAT
CGAACAGTGCTCACTAT

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGTGCACACCAT--
NNTTTGCACACGGCCC

PB0208.1_Zscan4_2/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGTGCACACCAT---
CGAAGCACACAAAATA

PB0013.1_Eomes_1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGTGCACACCAT---
NNTTTTCACACCTTNNN

PB0130.1_Gm397_2/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGTGCACACCAT---
AGCGGCACACACGCAA

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGTGCACACCAT----
-GAGCACAGCAGGACA

MA0479.1_FOXH1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGTGCACACCAT
TCCAATCCACA----

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGTGCACACCAT--
ATTTGCATACAATGG