Information for motif2


Reverse Opposite:

p-value:1e-123
log p-value:-2.843e+02
Information Content per bp:1.480
Number of Target Sequences with motif2411.0
Percentage of Target Sequences with motif16.83%
Number of Background Sequences with motif1283.6
Percentage of Background Sequences with motif10.33%
Average Position of motif in Targets100.3 +/- 54.5bp
Average Position of motif in Background99.5 +/- 62.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0132.1_Pdx1/Jaspar

Match Rank:1
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:YRATTAGC
-AATTAG-

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:YRATTAGC
YCATTAMC

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:3
Score:0.86
Offset:0
Orientation:forward strand
Alignment:YRATTAGC
TAATTAGN

MA0075.1_Prrx2/Jaspar

Match Rank:4
Score:0.84
Offset:1
Orientation:forward strand
Alignment:YRATTAGC
-AATTA--

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---YRATTAGC
ADBTAATTAR-

PB0031.1_Hoxa3_1/Jaspar

Match Rank:6
Score:0.82
Offset:-6
Orientation:forward strand
Alignment:------YRATTAGC
TGGAGGTAATTAAC

MA0125.1_Nobox/Jaspar

Match Rank:7
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--YRATTAGC
ACCAATTA--

PH0050.1_Hoxa3/Jaspar

Match Rank:8
Score:0.81
Offset:-6
Orientation:forward strand
Alignment:------YRATTAGC
TTGAGGTAATTAGT

PH0097.1_Lhx6_2/Jaspar

Match Rank:9
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----YRATTAGC----
TCCACTAATTAGCGGTT

PH0036.1_Gsx2/Jaspar

Match Rank:10
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----YRATTAGC----
AGGTTAATTAGCTGAT