Information for motif20


Reverse Opposite:

p-value:1e-28
log p-value:-6.659e+01
Information Content per bp:1.814
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets96.2 +/- 52.5bp
Average Position of motif in Background111.5 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR/Cell-Cycle-Exp/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GTTGAAWCCK
TTTGAAACCG

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTTGAAWCCK
ACTGAAACCA

MA0133.1_BRCA1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GTTGAAWCCK
GTGTTGN-----

PB0197.1_Zfp105_2/Jaspar

Match Rank:4
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------GTTGAAWCCK
NAAANTTATTGAANCAN

PB0030.1_Hnf4a_1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GTTGAAWCCK----
NNANTTGACCCCTNNNN

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTTGAAWCCK
GGTGYTGACAGS-

PB0068.1_Sox1_1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GTTGAAWCCK--
NNNTATTGAATTGNNN

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GTTGAAWCCK
NATGTTGCAA---

PB0034.1_Irf4_1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTTGAAWCCK--
CGTATCGAAACCAAA

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTTGAAWCCK
ATTGCATCAK