Information for motif21


Reverse Opposite:

p-value:1e-28
log p-value:-6.516e+01
Information Content per bp:1.878
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets104.7 +/- 56.3bp
Average Position of motif in Background107.7 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:1
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TCATGGGTASTG
RGSMTBCTGGGAAAT-

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TCATGGGTASTG
GTCATN-------

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TCATGGGTASTG
GTTAATGGCC----

PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TCATGGGTASTG-
GTCACGCTCNCTGA

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TCATGGGTASTG--
NNNNTTGGGCACNNCN

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TCATGGGTASTG
-CSTGGGAAAD-

PB0159.1_Rfx4_2/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TCATGGGTASTG-
TACCCTAGTTACCGA

MA0067.1_Pax2/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TCATGGGTASTG
AGTCACGC------

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TCATGGGTASTG
AGGTCAAGGTCA---

PB0051.1_Osr2_1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TCATGGGTASTG-----
-CNNNGCTACTGTANNN