Information for motif3


Reverse Opposite:

p-value:1e-121
log p-value:-2.795e+02
Information Content per bp:1.730
Number of Target Sequences with motif495.0
Percentage of Target Sequences with motif3.46%
Number of Background Sequences with motif121.0
Percentage of Background Sequences with motif0.97%
Average Position of motif in Targets95.7 +/- 59.3bp
Average Position of motif in Background104.5 +/- 71.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.90
Offset:-6
Orientation:forward strand
Alignment:------YGCCMCCTGGTG--
CNNBRGCGCCCCCTGSTGGC

MA0139.1_CTCF/Jaspar

Match Rank:2
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---YGCCMCCTGGTG----
TAGCGCCCCCTGGTGGCCA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:3
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----YGCCMCCTGGTG----
ANAGTGCCACCTGGTGGCCA

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:YGCCMCCTGGTG--
--CCCCCTGCTGTG

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----YGCCMCCTGGTG
GGTCCCGCCCCCTTCTC

MA0461.1_Atoh1/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:YGCCMCCTGGTG
-GCCATCTG---

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:YGCCMCCTGGTG
-GCCATCTGTT-

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:YGCCMCCTGGTG
-NNCACCTGNN-

PB0103.1_Zic3_1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:YGCCMCCTGGTG---
CCCCCCCGGGGGGGT

MA0155.1_INSM1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:YGCCMCCTGGTG
CGCCCCCTGACA