Information for motif33


Reverse Opposite:

p-value:1e-20
log p-value:-4.645e+01
Information Content per bp:1.896
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets112.4 +/- 52.5bp
Average Position of motif in Background52.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.64
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0596.1_SREBF2/Jaspar

Match Rank:1
Score:0.77
Offset:2
Orientation:forward strand
Alignment:YGATGTGGTGAT
--ATGGGGTGAT

MA0595.1_SREBF1/Jaspar

Match Rank:2
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:YGATGTGGTGAT
--GTGGGGTGAT

Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:YGATGTGGTGAT
--ATGGGGTGAT

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:YGATGTGGTGAT
NNHTGTGGTTWN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:YGATGTGGTGAT
-GCTGTGGTTT-

GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:YGATGTGGTGAT---
AGATGKDGAGATAAG

ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---YGATGTGGTGAT
ACAGGATGTGGT---

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:YGATGTGGTGAT
--CTGTGGTTTN

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:YGATGTGGTGAT
-NNTGTGGTTT-

MA0511.1_RUNX2/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---YGATGTGGTGAT
GGGGTTTGTGGTTTG