Information for motif35


Reverse Opposite:

p-value:1e-19
log p-value:-4.404e+01
Information Content per bp:1.910
Number of Target Sequences with motif238.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif108.9
Percentage of Background Sequences with motif0.88%
Average Position of motif in Targets102.8 +/- 54.3bp
Average Position of motif in Background111.3 +/- 57.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.37
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0183.1_Sry_2/Jaspar

Match Rank:1
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--CCTATTGT-------
CNNNTATTGTTCNNNNN

MA0077.1_SOX9/Jaspar

Match Rank:2
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CCTATTGT--
-CCATTGTTC

PB0132.1_Hbp1_2/Jaspar

Match Rank:3
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----CCTATTGT-----
TGTTCCCATTGTGTACT

PB0173.1_Sox21_2/Jaspar

Match Rank:4
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CCTATTGT-------
AATCAATTGTTCCGCTA

PB0065.1_Sox15_1/Jaspar

Match Rank:5
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---CCTATTGT------
ANNTCTATTGTTCNNNA

MA0078.1_Sox17/Jaspar

Match Rank:6
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CCTATTGT-
CTCATTGTC

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CCTATTGT--
NCCATTGTTC

PB0073.1_Sox7_1/Jaspar

Match Rank:8
Score:0.73
Offset:-6
Orientation:reverse strand
Alignment:------CCTATTGT--------
TNNANNTCTATTGTTNTNNANN

PB0168.1_Sox14_2/Jaspar

Match Rank:9
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CCTATTGT-----
NNNCCATTGTGTNAN

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CCTATTGT---
-CCATTGTTNY